4A5G - JenaLib

Asymmetric Unit (28, 28)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:33 , ALA A:36 , SER A:37 , ARG A:40 , PHE A:43 , SER A:75 , SER A:142 , PRO A:143 , PHE A:154 , LEU A:167 , SER A:168 , ALA A:170 , HIS A:171 , PHE A:173 , GLY A:174 , ARG A:175 , ALA A:176 , THR A:177 , VAL A:180 , LEU A:222 , SER A:247 , HOH A:2057 , HOH A:2058 , HOH A:2329	BINDING SITE FOR RESIDUE HEM A1307
02	AC2	SOFTWARE	ASP A:45 , VAL A:48 , GLY A:50 , ASP A:52 , SER A:54 , HOH A:2062	BINDING SITE FOR RESIDUE CA A1308
03	AC3	SOFTWARE	THR A:172 , ASP A:223 , THR A:226 , ALA A:229 , ASP A:231	BINDING SITE FOR RESIDUE CA A1309
04	AC4	SOFTWARE	GLN A:145 , ASN A:149 , HOH A:2169	BINDING SITE FOR RESIDUE NAG A1336
05	AC5	SOFTWARE	GLY A:2 , SER A:3 , LEU A:4 , ASN A:286	BINDING SITE FOR RESIDUE 1PE A1337
06	AC6	SOFTWARE	PHE A:28 , LEU A:113 , SER A:114 , XYP A:1315 , HOH A:2339 , HOH A:2340 , HOH A:2341	BINDING SITE FOR RESIDUE 1PE A1338
07	AC7	SOFTWARE	ARG B:33 , ALA B:36 , SER B:37 , ILE B:39 , ARG B:40 , PHE B:43 , SER B:75 , SER B:142 , PRO B:143 , PHE B:154 , LEU B:164 , LEU B:167 , ALA B:170 , HIS B:171 , GLY B:174 , ARG B:175 , ALA B:176 , THR B:177 , LEU B:222 , LEU B:245 , SER B:247 , HOH B:2058 , HOH B:2063 , HOH B:2064 , HOH B:2103 , HOH B:2306	BINDING SITE FOR RESIDUE HEM B1306
08	AC8	SOFTWARE	ASP B:45 , VAL B:48 , GLY B:50 , ASP B:52 , SER B:54 , HOH B:2074	BINDING SITE FOR RESIDUE CA B1307
09	AC9	SOFTWARE	THR B:172 , ASP B:223 , THR B:226 , ALA B:229 , ASP B:231	BINDING SITE FOR RESIDUE CA B1308
10	BC1	SOFTWARE	GLN B:29 , LEU B:113 , SER B:114 , ARG B:126 , ASP B:228 , GLY B:292 , SER B:293 , XYP B:1313 , 1PE B:1330 , HOH B:2317	BINDING SITE FOR RESIDUE 1PE B1329
11	BC2	SOFTWARE	ALA A:10 , GLY B:1 , SER B:112 , GLY B:115 , XYP B:1313 , MAN B:1314 , 1PE B:1329 , 1PE B:1334 , HOH B:2150 , HOH B:2317 , HOH B:2328 , HOH B:2329 , HOH B:2330 , HOH B:2331	BINDING SITE FOR RESIDUE 1PE B1330
12	BC3	SOFTWARE	PRO B:143 , GLY B:179 , VAL B:180 , HOH B:2208 , HOH B:2333 , HOH B:2334	BINDING SITE FOR RESIDUE PG0 B1331
13	BC4	SOFTWARE	HOH B:2335 , HOH B:2336	BINDING SITE FOR RESIDUE 1PE B1332
14	BC5	SOFTWARE	GLY B:2 , SER B:3 , LEU B:4 , ASN B:286	BINDING SITE FOR RESIDUE 1PE B1333
15	BC6	SOFTWARE	NAG B:1309 , FUC B:1310 , NAG B:1311 , 1PE B:1330 , HOH B:2328	BINDING SITE FOR RESIDUE 1PE B1334
16	BC7	SOFTWARE	ASN A:5 , PHE A:8 , ARG A:21 , GLN A:25 , LEU A:113 , NAG A:1335 , 1PE A:1338 , HOH A:2005 , HOH A:2015 , HOH A:2038 , HOH A:2330 , HOH A:2331 , HOH A:2332 , HOH A:2333 , HOH A:2334 , HOH A:2335 , HOH A:2336 , HOH A:2337 , HOH A:2338 , HOH A:2339 , HOH A:2340 , HOH A:2341 , HOH A:2342 , ALA B:6 , ARG B:21 , SER B:118 , TRP B:119 , THR B:120 , HOH B:2155	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1310 THROUGH XYP A1315 BOUND TO ASN A 5
17	BC8	SOFTWARE	ASN A:15 , ALA A:18 , THR A:22 , MAN A:1314	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1334 THROUGH NAG A1335 BOUND TO ASN A 15
18	BC9	SOFTWARE	ASN A:68 , ALA A:73 , GLN A:133 , ALA A:134 , ASN A:137	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1316 THROUGH FUC A1319 BOUND TO ASN A 137
19	CC1	SOFTWARE	ASN A:187 , GLY A:190 , HOH A:2357 , HOH A:2358 , HOH A:2359 , HOH A:2360	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1328 THROUGH XYP A1333 BOUND TO ASN A 187
20	CC2	SOFTWARE	SER A:155 , ASN A:199 , SER A:240 , ASN A:242 , HOH A:2265 , HOH A:2343 , HOH A:2344 , HOH A:2345 , HOH A:2346 , HOH A:2347 , HOH A:2348	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1320 THROUGH FUL A1323 BOUND TO ASN A 199
21	CC3	SOFTWARE	ASN A:269 , LEU A:272 , GLN A:275 , HOH A:2287 , HOH A:2349 , HOH A:2350 , HOH A:2352 , HOH A:2353 , HOH A:2354 , THR B:12 , PRO B:94 , HOH B:2136 , HOH B:2137	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1324 THROUGH FUC A1327 BOUND TO ASN A 269
22	CC4	SOFTWARE	ALA A:6 , SER A:17 , ARG A:21 , GLN A:108 , SER A:118 , TRP A:119 , THR A:120 , HOH A:2033 , HOH A:2035 , ASN B:5 , PHE B:8 , ARG B:21 , GLN B:25 , LEU B:113 , NAG B:1323 , 1PE B:1329 , 1PE B:1330 , 1PE B:1334 , HOH B:2005 , HOH B:2011 , HOH B:2030 , HOH B:2038 , HOH B:2307 , HOH B:2308 , HOH B:2312 , HOH B:2313 , HOH B:2314 , HOH B:2315 , HOH B:2316 , HOH B:2317 , HOH B:2318	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1309 THROUGH MAN B1314 BOUND TO ASN B 5
23	CC5	SOFTWARE	ASN B:15 , ALA B:18 , THR B:22 , MAN B:1314 , HOH B:2034	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1322 THROUGH MAN B1325 BOUND TO ASN B 15
24	CC6	SOFTWARE	GLN B:133 , ALA B:134 , ASN B:137	BINDING SITE FOR MONO-SACCHARIDE NAG B1326 BOUND TO ASN B 137
25	CC7	SOFTWARE	GLN B:145 , ASN B:149	BINDING SITE FOR MONO-SACCHARIDE NAG B1327 BOUND TO ASN B 149
26	CC8	SOFTWARE	ASN B:187 , GLY B:190	BINDING SITE FOR MONO-SACCHARIDE NAG B1328 BOUND TO ASN B 187
27	CC9	SOFTWARE	GLY B:158 , ASN B:199 , SER B:240 , ASN B:242 , HOH B:2253 , HOH B:2319 , HOH B:2320 , HOH B:2321 , HOH B:2322 , HOH B:2323 , HOH B:2324 , HOH B:2325	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1315 THROUGH BMA B1318 BOUND TO ASN B 199
28	DC1	SOFTWARE	ASN B:269 , THR B:271 , GLN B:275	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1319 THROUGH NAG B1321 BOUND TO ASN B 269

SS Bonds (8, 8)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:307
 aligned with K7N5L9_RAPSA | K7N5L9 from UniProtKB/TrEMBL  Length:308

    Alignment length:307
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       
         K7N5L9_RAPSA     2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTNGSG 308
               SCOP domains d4a5ga_ A: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.......hhhhh........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..................hhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhh.eeehhhhhhhh.hhhhh.......hhhhhhhhhhhh........eee..........hhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a5g A   2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTNGSG 308
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301

Chain B from PDB  Type:PROTEIN  Length:307
 aligned with K7N5L9_RAPSA | K7N5L9 from UniProtKB/TrEMBL  Length:308

    Alignment length:307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
         K7N5L9_RAPSA     1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTNGS 307
               SCOP domains d4a5gb_ B: automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhh.......hhhhh........hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.................hhhhhhhhh.....hhhhhhhhhhh...hhhhhhhhhhhhhh.eeehhhhhhhh.hhhhh.......hhhhhhhhhhhh........eee..........hhhhhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a5g B   1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDCKKTNGS 307
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

Asymmetric Unit(hide GO term definitions)

Chain A,B (K7N5L9_RAPSA | K7N5L9)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004601	peroxidase activity	Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0042744	hydrogen peroxide catabolic process	The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		DC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Lys B:213 - Gly B:214	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (10, 61)

Sites (28, 28)

SS Bonds (8, 8)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (9, 9)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File