4A42 - JenaLib

Title :   CPGH89CBM32-6 PRODUCED BY CLOSTRIDIUM PERFRINGENS

Authors :   E. Ficko-Blean, C. P. Stuart, M. D. Suits, M. Cid, M. Tessier, R. J. Woods A. B. Boraston

Date :   06 Oct 11 (Deposition) - 04 Apr 12 (Release) - 18 Apr 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase, Family 89 Glycoside Hydrolase, Family 32 Carbohydrate- Binding Module, Cpf_0859 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Ficko-Blean, C. P. Stuart, M. D. Suits, M. Cid, M. Tessier, R. J. Woods, A. B. Boraston
Carbohydrate Recognition By An Architecturally Complex Alpha-N-Acetylglucosaminidase From Clostridium Perfringens.
Plos One V. 7 33524 2012
PubMed-ID: 22479408 | Reference-DOI: 10.1371/JOURNAL.PONE.0033524

Compounds

Molecule 1 - ALPHA-N-ACETYLGLUCOSAMINIDASE FAMILY PROTEIN
	Chains	:	A, B
	EC Number	:	3.2.1.50
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	CBM32-4, RESIDUES 1496-1621
	Organism Scientific	:	CLOSTRIDIUM PERFRINGENS
	Organism Taxid	:	1502
	Synonym	:	GH89_CBM32-4

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 4)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	1	Mod. Amino Acid	SELENOMETHIONINE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:1517 , ASP A:1520 , ASN A:1522 , THR A:1525 , GLY A:1614 , GLU A:1615	BINDING SITE FOR RESIDUE CA A1690
2	AC2	SOFTWARE	ASN B:1517 , ASP B:1520 , ASN B:1522 , THR B:1525 , GLY B:1614 , GLU B:1615	BINDING SITE FOR RESIDUE CA B1690

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:127
 aligned with Q8XM24_CLOPE | Q8XM24 from UniProtKB/TrEMBL  Length:2104

    Alignment length:127
                                  1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623       
        Q8XM24_CLOPE   1504 PENLAMKDETKVEVTSNNSEANNLRDGNENTLWIPEQEEEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISNDGTEWTKIVDENNNEENKAVYSNILKSGKIGRFVRFNFNSENVKIGEIKIYKG 1630
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.hhh...eeee..hhhhhhhhhh..............eeeeeeeeeeee..eeeeee.......eeeeee......eeeeee........eeeee.....eeeeeeeee......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                4a42 A 1495 SENLAmKDETKVEVTSNNSEANNLRDGNENTLWVPGQEEEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISNDGTEWTKIVDENNNEENKAVYSNILKSGKIGRFVRFNFNSENVKIGEIKIYKG 1621
                                 |1504      1514      1524      1534      1544      1554      1564      1574      1584      1594      1604      1614       
                                 |                                                                                                                         
                              1500-MSE

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with Q8XM24_CLOPE | Q8XM24 from UniProtKB/TrEMBL  Length:2104

    Alignment length:126
                                  1514      1524      1534      1544      1554      1564      1574      1584      1594      1604      1614      1624      
        Q8XM24_CLOPE   1505 ENLAMKDETKVEVTSNNSEANNLRDGNENTLWIPEQEEEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISNDGTEWTKIVDENNNEENKAVYSNILKSGKIGRFVRFNFNSENVKIGEIKIYKG 1630
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhh...eeee..hhhhhhhhhh..............eeeeeeeeeeeeeeeeeeee.......eeeeee.....eeeeeee........eeeeeeeeeeeeeeeeeee......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                4a42 B 1496 ENLAmKDETKVEVTSNNSEANNLRDGNENTLWVPGQEEEKSVTFDLSKEKDISAIDIVSKGNSPLKYSIEISNDGTEWTKIVDENNNEENKAVYSNILKSGKIGRFVRFNFNSENVKIGEIKIYKG 1621
                                | 1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      
                             1500-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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	Cis Peptide Bonds
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Biological Units
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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

2vc9	FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH 2-ACETAMIDO-1,2-DIDEOXYNOJIRMYCIN
2vca	FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH BETA-N-ACETYL-D-GLUCOSAMINE
2vcb	FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS IN COMPLEX WITH PUGNAC
2vcc	FAMILY 89 GLYCOSIDE HYDROLASE FROM CLOSTRIDIUM PERFRINGENS
4a3z	CPGH89CBM32-4 (SELENO-METHIONINE LABELED) PRODUCED BY CLOSTRIDIUM PERFRINGENS
4a41	CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALACTOSE
4a43	CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALNAC
4a44	CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH THE TN ANTIGEN
4a45	CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH GALNAC-BETA-1,3-GALACTOSE
4a4a	CPGH89 (E483Q, E601Q), FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH ITS SUBSTRATE GLCNAC-ALPHA-1,4-GALACTOSE

Description