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Title :   STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF BACTERIOPHAGE T7 FIBRE GP17 CONTAINING RESIDUES 371-553, C2221 CRYSTAL FORM.

Authors :   C. Garcia-Doval, M. J. Van Raaij

Date :   12 Sep 11 (Deposition) - 30 May 12 (Release) - 28 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Viral Protein, Caudovirales, Podoviridae, Bacteriophage Fibre, Receptor Binding, Beta-Helix, Beta-Sandwich (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Garcia-Doval, M. J. Van Raaij
Structure Of The Receptor-Binding Carboxy-Terminal Domain Of Bacteriophage T7 Tail Fibers.
Proc. Natl. Acad. Sci. Usa V. 109 9390 2012
PubMed-ID: 22645347 | Reference-DOI: 10.1073/PNAS.1119719109
(for further references see the PDB file header)

Molecule 1 - TAIL FIBER PROTEIN
	Atcc	:	BAA-1025-B2
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET30
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL REGION, RESIDUES 371-553
	Organism Scientific	:	ENTEROBACTERIA PHAGE T7
	Organism Taxid	:	10760
	Other Details	:	DNA OBTAINED FROM LABORATORY OF JL CARRASCOSA
	Synonym	:	BACTERIOPHAGE T7 FIBRE GP17

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	CO3	2	Ligand/Ion	CARBONATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:422 , TYR A:425 , HOH A:2084 , HOH A:2360 , HOH A:2362 , GLN B:436	BINDING SITE FOR RESIDUE CO3 A1554
2	AC2	SOFTWARE	LYS B:422 , TYR B:425 , HOH B:2298 , HOH B:2299 , GLN C:436	BINDING SITE FOR RESIDUE CO3 B1554

(no "SS Bond" information available for 4A0U)

(no "Cis Peptide Bond" information available for 4A0U)

(no "SAP(SNP)/Variant" information available for 4A0U)

(no "PROSITE Motif" information available for 4A0U)

(no "Exon" information available for 4A0U)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:183
 aligned with FIBER_BPT7 | P03748 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:183
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   
           FIBER_BPT7   371 GHVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee..eeeeeeee.......eeeee....eeeee....eee..eeee..eee.....eehhhhh..hhhhhhhhhh......eeeeee.......eee........eeeee.hhh.eeeee....eeeee.....eeeeeee....eeeeeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a0u A 371 GHVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with FIBER_BPT7 | P03748 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:213
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   
           FIBER_BPT7   341 TAIGGNIQLVVNGQIITQGGAMTGQLKLQNGHVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....---------------------------eeeeee......eeeeeee..eeeeeeee.......eeeee....eeeee...eeee...eee..eee.....eehhhhh..hhhhhhhhhh......eeeeee.......eee........eeeee.....eeeee....eeeee.....eeeeeee....eeeeeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a0u B 368 KAMG---------------------------HVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
                               |     -         -         - |     380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   
                             371                         372

Chain C from PDB  Type:PROTEIN  Length:183
 aligned with FIBER_BPT7 | P03748 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:183
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   
           FIBER_BPT7   371 GHVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....eeeeeee..eeeeeeee.......eeeee....eeeee...eeee..eeee..eee.....eehhhhh..hhhhhhhhhh......eeeeee.......eee........eeeee.hhh.eeeee....eeeee.....eeeeeee....eeeeeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4a0u C 371 GHVLQLESASDKAHYILSKDGNRNNWYIGRGSDNNNDCTFHSYVHGTTLTLKQDYAVVNKHFHVGQAVVATDGNIQGTKWGGKWLDAYLRDSFVAKSKAWTQVWSGSAGGGVSVTVSQDLRFRNIWIKCANNSWNFFRTGPDGIYFIASDGGWLRFQIHSNGLGFKNIADSRSVPNAIMVENE 553
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4A0U)

(no "CATH Domain" information available for 4A0U)

(no "Pfam Domain" information available for 4A0U)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (FIBER_BPT7 | P03748)

biological process
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0019012	virion	The complete fully infectious extracellular virus particle.

Asymmetric/Biological Unit
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	FIBER_BPT7 \| P03748	:	4a0t

4a0t	STRUCTURE OF THE CARBOXY-TERMINAL DOMAIN OF BACTERIOPHAGE T7 FIBRE GP17 CONTAINING RESIDUES 371-553 .

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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