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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CYTOPLASMIC N-TERMINAL DOMAIN OF YERSINIA PESTIS YSCD
 
Authors :  G. T. Lountos, J. E. Tropea, D. S. Waugh
Date :  08 Sep 11  (Deposition) - 29 Feb 12  (Release) - 28 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transport Protein, Sad Phasing, Type Iii Secretion System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. T. Lountos, J. E. Tropea, D. S. Waugh
Structure Of The Cytoplasmic Domain Of Yersinia Pestis Yscd, An Essential Component Of The Type Iii Secretion System
Acta Crystallogr. , Sect. D V. 68 201 2012
PubMed-ID: 22349221  |  Reference-DOI: 10.1107/S0907444911054308

(-) Compounds

Molecule 1 - TYPE III SECRETION PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PJT173
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CYTOPLASMIC DOMAIN, RESIDUES 2-121
    Organism Scientific: YERSINIA PESTIS
    Organism Taxid: 632
    Synonym: YSCD

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4A0E)

(-) Sites  (0, 0)

(no "Site" information available for 4A0E)

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4A0E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q56975_YERPE | Q56975 from UniProtKB/TrEMBL  Length:419

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
         Q56975_YERPE     1 MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhh..eeee..eeeeee.......ee..........eeeeee..eeeeeee....ee..ee............eee..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4a0e A   1 GSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain B from PDB  Type:PROTEIN  Length:108
 aligned with Q56975_YERPE | Q56975 from UniProtKB/TrEMBL  Length:419

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
         Q56975_YERPE     1 MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhh..eeee..eeeeee.......ee..........eeeee....eeeeee....ee..ee............eee..eeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 4a0e B   1 GSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPT 108
                                    10        20        30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4A0E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4A0E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4A0E)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q56975_YERPE | Q56975)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  4a0e
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