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(-) Description

Title :  MITOGEN ACTIVATED PROTEIN KINASE 7 IN COMPLEX WITH INHIBITOR
 
Authors :  D. J. Ogg, J. Tucker
Date :  13 May 15  (Deposition) - 04 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Chen, J. Tucker, X. Wang, P. R. Gavine, C. Phillips, M. A. Augustin, P. Schreiner, S. Steinbacher, M. Preston, D. Ogg
Discovery Of A Novel Allosteric Inhibitor-Binding Site In Erk5: Comparison With The Canonical Kinase Hinge Atp-Bindin Site.
Acta Crystallogr D Struct V. 72 682 2016 Biol
PubMed-ID: 27139631  |  Reference-DOI: 10.1107/S2059798316004502

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 7
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC HT A
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 53-393
    Gene: MAPK7, BMK1, ERK5, PRKM7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED KINASE 5,ERK-5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
14QZ1Ligand/Ion3-AMINO-5-[(4-CHLOROPHENYL)AMINO]-N-[(1S)-1-PHENYLETHYL]-1H-1,2,4-TRIAZOLE-1-CARBOXAMIDE
2GOL5Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:66 , GLN A:79 , LYS A:84 , ILE A:86 , ASN A:95 , ARG A:98 , THR A:99 , GLU A:102 , LEU A:103 , ILE A:117 , VAL A:135binding site for residue 4QZ A 401
2AC2SOFTWARELEU A:154 , ARG A:258 , ALA A:291 , GLU A:292 , ARG A:293binding site for residue GOL A 402
3AC3SOFTWAREGLU A:192 , GLU A:220 , ARG A:225 , ARG A:228 , TYR A:267binding site for residue GOL A 403
4AC4SOFTWAREHIS A:108 , TYR A:172 , ALA A:360binding site for residue GOL A 404
5AC5SOFTWAREPHE A:90 , ASP A:91 , ARG A:374 , GLU A:375 , HOH A:514 , HOH A:527binding site for residue GOL A 405
6AC6SOFTWAREGLU A:192 , THR A:224 , ARG A:225 , TRP A:226binding site for residue GOL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZSL)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:360 -Pro A:361

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZSL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZSL)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZSL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee...eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeee.....hhhhh..eeeee....eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..............hhhhhhhhhh.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhh......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsl A  53 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEPDCAPPFDFAFDREALTRERIKEAIVAEIEDFHARRE 393
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZSL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZSL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZSL)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:360 - Pro A:361   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK07_HUMAN | Q13164: 2q8y 4b99 4ic7 4ic8 4zsg 4zsj 5byy 5byz

(-) Related Entries Specified in the PDB File

4zsg 4ZSG CONTAINS THE SAME PROTEIN COMPLEXED WITH DIFFERENT INHIBITOR