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(-) Description

Title :  MITOGEN ACTIVATED PROTEIN KINASE 7 IN COMPLEX WITH INHIBITOR
 
Authors :  J. Tucker, D. J. Ogg
Date :  13 May 15  (Deposition) - 04 May 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Chen, J. Tucker, X. Wang, P. R. Gavine, C. Phillips, M. A. Augustin, P. Schreiner, S. Steinbacher, M. Preston, D. Ogg
Discovery Of A Novel Allosteric Inhibitor-Binding Site In Erk5: Comparison With The Canonical Kinase Hinge Atp-Bindin Site.
Acta Crystallogr D Struct V. 72 682 2016 Biol
PubMed-ID: 27139631  |  Reference-DOI: 10.1107/S2059798316004502

(-) Compounds

Molecule 1 - MITOGEN-ACTIVATED PROTEIN KINASE 7
    Chains: A
    EC Number: 2.7.11.24
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Plasmid: PFASTBAC HT A
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 50-393
    Gene: MAPK7, BMK1, ERK5, PRKM7
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MAPK 7,BIG MAP KINASE 1,BMK-1,EXTRACELLULAR SIGNAL-REGULATED KINASE 5,ERK-5

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
14R01Ligand/Ion3-AMINO-5-[(4-CHLORO-3-METHYLPHENYL)AMINO]-N-(PROPAN-2-YL)-1H-1,2,4-TRIAZOLE-1-CARBOXAMIDE
2GOL4Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:154 , THR A:155 , ARG A:258 , ALA A:291 , GLU A:292 , ARG A:293binding site for residue GOL A 401
2AC2SOFTWAREGLU A:192 , GLU A:220 , ARG A:225 , ARG A:228 , TYR A:267binding site for residue GOL A 402
3AC3SOFTWAREHIS A:108 , TYR A:172 , ALA A:360binding site for residue GOL A 403
4AC4SOFTWAREVAL A:92 , THR A:94 , ASP A:112 , ASN A:113 , TYR A:164 , GLN A:165 , ARG A:168 , GLU A:195binding site for residue GOL A 404
5AC5SOFTWARETYR A:66 , LYS A:84 , ILE A:86 , ASN A:95 , ARG A:98 , THR A:99 , GLU A:102 , LEU A:103 , ILE A:117 , VAL A:135 , LEU A:137binding site for residue 4R0 A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZSJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:360 -Pro A:361

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZSJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZSJ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZSJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:344
                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeee...eeeeeeee.....eeeeeee.....hhhhhhhhhhhhhhhhhh.......eeee.....hhhhh..eeeeee...eehhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee..............hhhhhhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh..hhhhhhh..hhhhhhhhhh.......hhhhhh...hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhh...hhhhh........hhhhhh..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsj A  50 DVGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDDEPDCAPPFDFAFDREALTRERIKEAIVAEIEDFHARRE 393
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZSJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZSJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZSJ)

(-) Gene Ontology  (42, 42)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:360 - Pro A:361   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MK07_HUMAN | Q13164: 2q8y 4b99 4ic7 4ic8 4zsg 4zsl 5byy 5byz

(-) Related Entries Specified in the PDB File

4zsg 4ZSG CONTAINS THE SAME PROTEIN COMPLEXED WITH AS DIFFERENT INHIBITOR