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(-) Description

Title :  HUMAN A20 OTU DOMAIN WITH I325N AND ALKYLATED C103
 
Authors :  D. B. Langley, D. Christ, S. T. Grey
Date :  12 May 15  (Deposition) - 08 Jun 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Ubiquitin Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. B. Langley, D. Christ, D. T. Grey
Human A20 Otu Domain With I325N And Acetylated C103
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TUMOR NECROSIS FACTOR ALPHA-INDUCED PROTEIN 3
    Chains: A, B, C, D, E, F
    EC Number: 3.4.19.12, 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX P61
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TNFAIP3, OTUD7C
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: TNF ALPHA-INDUCED PROTEIN 3,OTU DOMAIN-CONTAINING PROTEIN 7C,PUTATIVE DNA-BINDING PROTEIN A20,ZINC FINGER PROTEIN A20

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  BC   
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1YCM6Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1YCM2Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1YCM2Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1YCM2Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE

(-) Sites  (0, 0)

(no "Site" information available for 4ZRH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZRH)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Asn A:34 -Gly A:35
2Ser A:266 -Gly A:267
3Asn B:34 -Gly B:35
4Asn C:34 -Gly C:35
5Asn D:34 -Gly D:35
6Asn F:34 -Gly F:35

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZRH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZRH)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZRH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhee........ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhh..........hhhhhhhhhhhh...eeee....eee.....hhhhh....eeeeee..eeeeeee.........eee.ee...ee......hhhhhhhhhhhhhhhh.ee....eee......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrh A   6 LPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQNWNDEWDNLIKMASTDTLQYNSLEEIHIFVLCNILRRPIIVISKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGPEIRAVPLVNRRFEDLKVHFLTDPENEMKEKLLKEYLMVIEINNAAKLDEANLPKEINLVDDYFELVQHEYKKWQ 357
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145    || 167       177 ||    193       203       229       239       249       259       269       282       292       302       312|      334       344       354   
                                                                                                                           103-YCM                                        150|             179|                      211|                                               278|                           312|                                
                                                                                                                                                                           163              186                       228                                                282                            325                                


Chain B from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhee........ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh.........hhhhhhhhhhhh...eeee....eee.....hhhhh....eeeeee..eeeeeee.........eee............hhhhhhhhhhhhhhhh.eee...eeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrh B   6 LPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSNWNDEWDNLIKMASTDLQYNSLEEIHIFVLCNILRRPIIVISKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDSGPEIRAVPLVNFEDLKVHFLTDPENEMKEKLLKEYLMVIEILNNAAKLDEANLPKEINLVDDYFELVQHEYKKWQE 358
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145   ||  168       178|      195       205     ||231       241       251       261       271     ||286       296       306     ||327       337       347       357 
                                                                                                                           103-YCM                                       149|            178|                      211|                                              277|                          312|                                  
                                                                                                                                                                          163             186                       228                                               283                           324                                  


Chain C from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhee........ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhh.........hhhhhhhhhhhh...eeee...eee.....hhhhh....eeeeee..eeeeeee......eee............hhhhhhhhhhhhhhhh.eee...eeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zrh C   6 LPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFNWNDEWDNLIKMASTDTQYNSLEEIHIFVLCNILRRPIIVISVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDEIRAVPLVRFEDLKVHFLTDPENEMKEKLLKEYLMVIEIPNNAAKLDEANLPKEINLVDDYFELVQHEYKKWQE 358
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145      |165       175   ||  192       202       229       239       249       259     ||272   ||  287       297       307     ||328       338       348       358
                                                                                                                           103-YCM                                          152|             179|                     211|                                 265|    276|                            313|                                 
                                                                                                                                                                             163              187                      229                                  269     282                             325                                 


Chain D from PDB  Type:PROTEIN  Length:301
                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhee........ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhh...eeee....eee.....hhhhh....eeeeee..eeeeeee.......eee...........hhhhhhhhhhhhhhhh.eee...eeee......hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrh D   5 VLPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQRNWNDEWDNLIKMASTDTQYNSLEEIHIFVLCNILRRPIIVISKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKDPEIRAVPLVFEDLKVHFLTDPENEMKEKLLKEYLMVIEIPNNAAKLDEANLPKEINLVDDYFELVQHEYKKWQE 358
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144     ||165       175   ||  192       202       228       238       248       258      |270     ||286       296       306      |327       337       347       357 
                                                                                                                            103-YCM                                        150|              179|                     211|                                  265|     276|                           313|                                 
                                                                                                                                                                            162               187                      228                                   268      283                            325                                 


Chain E from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhee....ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh............ee.......hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhh...eeee....eee.....hhhhh....eeeeee..eeeeee....eee...........hhhhhhhhhhhhhhhh.ee..eee......hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zrh E   6 LPQALYLSNMRKAVKIRERTPEDIFKPIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKNWNDEWDNLIKMASTQYNSLEEIHIFVLCNILRRPIIVISKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTEIRAVPLVFEDLKVHFLTDPENEMKEKLLKEYLMVIENAAKLDEANLPKEINLVDDYFELVQHEYKKW 356
                                    15        25      ||39        49        59        69        79        89        99   |   109       119       129       139       163       173   ||  192       202       228       238       248       258   ||  274 ||    290       300       310||     334       344       354  
                                                     32|                                                               103-YCM                                      148|           177|                     211|                               262|    276|                         311|                              
                                                      37                                                                                                             163            187                      228                                269     283                          326                              


Chain F from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhee........ee.hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh...........eee.......hhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhh...eeee...eee.....hhhhh....eeeeee..eeeeeee...eee........hhhhhhhhhhhhhhhh.ee...eee......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zrh F   6 LPQALYLSNMRKAVKIRERTPEDIFKPTNGIIHHFKTMHRYTLEMFRTCQFCPQFREIIHKALIDRNIQATLESQKKLNWCREVRKLVALKTNGDGNcLMHATSQYMWGVQDTDLVLRKALFSTLNFKFRWIKMASTDQYNSLEEIHIFVLCNILRRPIIVIKVGGIYLPLHWPAQECYRYPIVLGYDSHHFVPLVTLKRAVPLVLKVHFLTDPENEMKEKLLKEYLMVILNNAAKLDEANLPKEINLVDDYFELVQHEYKK 355
                                    15        25        35        45        55        65        75        85        95       105       115       125    || 141||     188       198       208 ||    235       245       255       271    || 290       300       310|      333       343       353  
                                                                                                                           103-YCM                    130|  142|   178|                    210|                                 264|  276|                     310|                               
                                                                                                                                                       137   172    187                     228                                  271   286                      324
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZRH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZRH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZRH)

(-) Gene Ontology  (76, 76)

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  Cis Peptide Bonds
    Asn A:34 - Gly A:35   [ RasMol ]  
    Asn B:34 - Gly B:35   [ RasMol ]  
    Asn C:34 - Gly C:35   [ RasMol ]  
    Asn D:34 - Gly D:35   [ RasMol ]  
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  4zrh
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  TNAP3_HUMAN | P21580
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNAP3_HUMAN | P21580: 2eqe 2eqf 2eqg 2vfj 3dkb 3oj3 3oj4 3vuw 3vux 3vuy 3zjd 3zje 3zjf 3zjg 4zs5 5dod 5lrx

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZRH)