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(-) Description

Title :  YOPH W354H YERSINIA ENTEROCOLITICA PTPASE BOND WITH DIVANADATE GLYCEROL ESTER IN THE ACTIVE SITE
 
Authors :  G. E. Moise, S. J. Johnson, A. C. Hengge
Date :  27 Apr 15  (Deposition) - 28 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.12
Chains :  Asym./Biol. Unit :  A
Keywords :  Phosphatase, Yersinia, Ptp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Moise, N. M. Gallup, A. N. Alexandrova, A. C. Hengge, S. J. Johnson
Conservative Tryptophan Mutants Of The Protein Tyrosine Phosphatase Yoph Exhibit Impaired Wpd-Loop Function And Crystallize With Divanadate Esters In Their Active Sites.
Biochemistry V. 54 6490 2015
PubMed-ID: 26445170  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00496
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYROSINE-PROTEIN PHOSPHATASE YOPH
    Chains: A
    EC Number: 3.1.3.48
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: T7
    Fragment: CATALYTIC DOMAIN (UNP RESIDUES 164-468)
    Gene: YOPH, YOP51
    Mutation: YES
    Organism Scientific: YERSINIA ENTEROCOLITICA
    Organism Taxid: 630
    Strain: DH5A
    Synonym: VIRULENCE PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1DVG1Ligand/IonDIVANADATE GLYCEROL ESTER
2VO41Ligand/IonVANADATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:403 , ARG A:404 , ALA A:405 , GLY A:406 , VAL A:407 , GLY A:408 , ARG A:409 , GLN A:446 , LYS A:447 , GLN A:450 , HOH A:629 , HOH A:702 , HOH A:872binding site for residue DVG A 501
2AC2SOFTWAREARG A:278 , LYS A:342 , SER A:388 , SER A:389 , HOH A:609 , HOH A:613 , HOH A:634binding site for residue VO4 A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZI4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZI4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZI4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZI4)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZI4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhh....................................eeeeee..eeeeee...hhhhhhhhhhhhhhh....eee..hhhhhhhhhhh........eee..eeeeeeeeeeeeee..eeeeeeeeeee......eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh......eee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zi4 A 187 SPYGPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRADLNANYIQVGNTRTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNHPDQTAVSSEVTKALASLVDQTAETKRNMYESKGSSAVADDSKLRPVIHCRAGVGRTAQLIGAMCMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQGRPLLNS 468
                                   196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZI4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZI4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZI4)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  4zi4
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  YOPH_YEREN | P15273
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YOPH_YEREN | P15273: 1lyv 1pa9 1xxp 1xxv 1ypt 1ytn 1yts 1ytw 2i42 3blt 3blu 3bm8 3f99 3f9a 3f9b 3u96 4gf3 4yaa 4z6b 4zn5

(-) Related Entries Specified in the PDB File

4yaa 4YAA IS THE SINGLE MUTATION DIFFERENT FROM THIS PROTEIN Y354H, WITH NOTHING IN THE ACTIVE SITE
4z6b 4Z6B IS THE SAME PROTEIN WITH OUT A LIGAND IN THE ACTIVE SITE