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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE SEMET SUBSTITUTED TOPLESS RELATED PROTEIN 2 (TPR2) N-TERMINAL DOMAIN (1-209) FROM RICE
 
Authors :  J. Ke, H. Ma, X. Gu, J. S. Brunzelle, H. E. Xu, K. Melcher
Date :  24 Apr 15  (Deposition) - 05 Aug 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Transcriptional Corepressor, Alpha-Helical Structure, Tetrameric Protein, Plant Transcriptional Repression, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Ke, H. Ma, X. Gu, A. Thelen, J. S. Brunzelle, J. Li, H. E. Xu, K. Melcher
Structural Basis For Recognition Of Diverse Transcriptional Repressors By The Topless Family Of Corepressors.
Sci Adv V. 1 00107 2015
PubMed-ID: 26601214  |  Reference-DOI: 10.1126/SCIADV.1500107

(-) Compounds

Molecule 1 - ASPR2 PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-209)
    Gene: P0705D01.10-1, ASPR2, OS01G0254100, OSJ_01134
    Organism Common: RICE
    Organism Scientific: ORYZA SATIVA SUBSP. JAPONICA
    Organism Taxid: 39947
    Synonym: OS01G0254100 PROTEIN, PUTATIVE CTV.2

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric/Biological Unit (1, 16)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4ZHE)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:186 -A:204
2B:186 -B:204

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Pro A:191 -Asn A:192
2Asn A:192 -Pro A:193
3Cys D:186 -Lys D:187

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZHE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZHE)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZHE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zhe A   1 mSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNmKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSmKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSImLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCT 205
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140  |    150       160       170       180       190       200     
                            |                                   38-MSE                          70-MSE                                                                  143-MSE                                                          
                            1-MSE                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zhe B   1 mSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNmKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSmKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSImLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLNWQHQLCKNPRIKTLFTDHTCTPP 207
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140  |    150       160       170       180       190|      204   
                            1-MSE                               38-MSE                          70-MSE                                                                  143-MSE                                        190|            
                                                                                                                                                                                                                        195            


Chain C from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zhe C   1 mSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNmKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSmKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSImLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLNWQHQLCKNKTLFTDHTCTP 206
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140  |    150       160       170       180       197         
                            1-MSE                               38-MSE                          70-MSE                                                                  143-MSE                                      188|          
                                                                                                                                                                                                                      196          


Chain D from PDB  Type:PROTEIN  Length:206
                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh...................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zhe D   1 mSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNmKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSmKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSImLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTP 206
                            |       10        20        30       |40        50        60        70        80        90       100       110       120       130       140  |    150       160       170       180       190       200      
                            1-MSE                               38-MSE                          70-MSE                                                                  143-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZHE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZHE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZHE)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asn A:192 - Pro A:193   [ RasMol ]  
    Cys D:186 - Lys D:187   [ RasMol ]  
    Pro A:191 - Asn A:192   [ RasMol ]  
 

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  4zhe
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TPR1_ORYSJ | Q5NBT9: 5c6q 5c6v 5c7e 5c7f 5j9k 5ja5 5jgc 5jhp

(-) Related Entries Specified in the PDB File

5c6q 5c6v 5c7e 5c7f