4ZG7 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURAL BASIS FOR INHIBITION OF HUMAN AUTOTAXIN BY FOUR NOVEL COMPOUNDS

Authors :   A. J. Stein, G. Bain, J. H. Hutchinson, J. F. Evans

Date :   22 Apr 15 (Deposition) - 14 Oct 15 (Release) - 11 Nov 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym./Biol. Unit : A

Keywords :   Autotaxin, Enpp2, Inhibitor, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. J. Stein, G. Bain, P. Prodanovich, A. M. Santini, J. Darlington, N. M. Stelzer, R. S. Sidhu, J. Schaub, L. Goulet, D. Lonergan, I. Calderon, J. F. Evans, J. H. Hutchinson
Structural Basis For Inhibition Of Human Autotaxin By Four Potent Compounds With Distinct Modes Of Binding.
Mol. Pharmacol. V. 88 982 2015
PubMed-ID: 26371182 | Reference-DOI: 10.1124/MOL.115.100404

Molecule 1 - ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY MEMBER 2
	Chains	:	A
	EC Number	:	3.1.4.39
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACMID
	Fragment	:	UNP RESIDUES 55-860
	Gene	:	ENPP2, ATX, PDNP2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (8, 17)

No.	Name	Count	Type	Full Name
1	4O0	1	Ligand/Ion	3-({6-CHLORO-7-FLUORO-2-METHYL-1-[2-OXO-2-(SPIRO[CYCLOPROPANE-1,3'-INDOL]-1'(2'H)-YL)ETHYL]-1H-INDOL-3-YL}SULFANYL)-2-FLUOROBENZOIC ACID
2	CA	1	Ligand/Ion	CALCIUM ION
3	CL	1	Ligand/Ion	CHLORIDE ION
4	GOL	7	Ligand/Ion	GLYCEROL
5	NA	2	Ligand/Ion	SODIUM ION
6	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	NKN	1	Ligand/Ion	(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL TETRADECANOATE
8	ZN	2	Ligand/Ion	ZINC ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:312 , HIS A:316 , HIS A:475 , NKN A:909	binding site for residue ZN A 903
02	AC2	SOFTWARE	ASP A:172 , THR A:210 , ASP A:359 , HIS A:360 , NKN A:909	binding site for residue ZN A 904
03	AC3	SOFTWARE	ASP A:740 , ASP A:742 , ASP A:744 , LEU A:746 , ASP A:748 , HOH A:1429	binding site for residue CA A 905
04	AC4	SOFTWARE	TYR A:670 , ASP A:673 , MET A:676 , HOH A:1400	binding site for residue NA A 906
05	AC5	SOFTWARE	ASN A:802 , SER A:805 , SER A:808 , HOH A:1219 , HOH A:1345 , HOH A:1447	binding site for residue NA A 907
06	AC6	SOFTWARE	SER A:82 , PHE A:211 , LEU A:214 , TYR A:215 , LYS A:249 , PHE A:250 , HIS A:252 , TRP A:255 , TRP A:261 , PHE A:275 , TRP A:276 , SER A:277 , VAL A:278 , GOL A:910 , HOH A:1023 , HOH A:1311	binding site for residue 4O0 A 908
07	AC7	SOFTWARE	ASP A:172 , LYS A:209 , THR A:210 , PHE A:211 , LEU A:214 , ASN A:231 , TYR A:307 , ASP A:312 , HIS A:316 , HIS A:360 , HIS A:475 , ZN A:903 , ZN A:904 , HOH A:1106 , HOH A:1298	binding site for residue NKN A 909
08	AC8	SOFTWARE	SER A:82 , SER A:277 , VAL A:278 , VAL A:279 , 4O0 A:908	binding site for residue GOL A 910
09	AC9	SOFTWARE	VAL A:512 , ASP A:515 , THR A:527 , HIS A:528 , GLY A:529 , SER A:530 , LEU A:531 , ASN A:532 , LEU A:535 , HOH A:1040	binding site for residue GOL A 911
10	AD1	SOFTWARE	GLY A:227 , ASN A:438 , ARG A:439 , ARG A:440 , HOH A:1035 , HOH A:1117 , HOH A:1284	binding site for residue GOL A 912
11	AD2	SOFTWARE	ILE A:409 , THR A:413 , LYS A:422 , PRO A:423 , ARG A:799 , GLU A:803 , HOH A:1019 , HOH A:1258	binding site for residue GOL A 913
12	AD3	SOFTWARE	VAL A:448 , GLU A:449 , ARG A:450 , ASP A:478 , MET A:822 , HOH A:1030 , HOH A:1411	binding site for residue GOL A 914
13	AD4	SOFTWARE	TYR A:724 , ARG A:728 , SER A:792 , HIS A:857 , TYR A:859 , HOH A:1103 , HOH A:1167	binding site for residue GOL A 915
14	AD5	SOFTWARE	THR A:265 , ALA A:271 , GLY A:272 , PHE A:274 , HOH A:1186 , HOH A:1380	binding site for residue GOL A 916
15	AD6	SOFTWARE	GLY A:230 , ASN A:231 , ARG A:392	binding site for residue CL A 917
16	AD7	SOFTWARE	PRO A:523 , ASN A:525 , HIS A:832 , HOH A:1049 , HOH A:1108 , HOH A:1143 , HOH A:1174 , HOH A:1218 , HOH A:1286 , HOH A:1309	binding site for Poly-Saccharide residues NAG A 901 through NAG A 902 bound to ASN A 525

Asymmetric/Biological Unit

No.	Residues
1	A:59	-	A:76
2	A:63	-	A:94
3	A:74	-	A:87
4	A:80	-	A:86
5	A:103	-	A:120
6	A:108	-	A:138
7	A:118	-	A:131
8	A:124	-	A:130
9	A:149	-	A:195
10	A:157	-	A:351
11	A:367	-	A:469
12	A:414	-	A:806
13	A:567	-	A:667
14	A:569	-	A:652
15	A:775	-	A:785

Asymmetric/Biological Unit

No.	Residues
1	Pro A:71	-	Pro A:72
2	Tyr A:206	-	Pro A:207
3	Gln A:310	-	Pro A:311

(no "SAP(SNP)/Variant" information available for 4ZG7)

(no "PROSITE Motif" information available for 4ZG7)

(no "Exon" information available for 4ZG7)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:776
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhh....hhhhhhh........hhhhh..............hhhhhh....hhhhhhh...hhhhh..................eeeeeee..hhhhhhhhhhhhhhhhhhhhhhee...ee.....hhhhhhhhhhhh.hhhhhh.....eee....eee....hhhhhhhhh...hhhhhhhhh.............hhhhhhhhhhhhh.........eeeeeeeeehhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee....ee.....eee.hhh......eeee...eeeeee........hhhhhhhhhh.......eeeee.hhhhhhhh.........eeeee....eee.........ee......hhhhh..eeee.......ee...ee..hhhhhhhhhh.............hhhhh.......................hhhhh.................ee.....eeeee....eeeee.....eeeeeeee.........hhhhh.........hhhhh.hhhhhhhh...eeee..hhhhh....hhhhhhhhh.eeeehhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..........hhhhh.............eeeeeeeee.....hhhhh...eeeeeeeee.............hhhhhhhhhhhhheehhhhhhhhhhee.......hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg7 A  55 ISGSCKGRCFELQEAGPPDCRCDNLCKSYTSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLARGDCCTNYQVVCKGESHWVDDDCEEIKAAECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHSPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNSMYDPVFDATFHLRGREKFNHRWWGGQPLWITATKQGVKAGTFFWSVVIPHERRILTILQWLTLPDHERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKIVGQLMDGLKQLKLHRCVNVIFVGDHGMEDVTCDRTEFLSNYLTNVDDITLVPGTLGRIRSKFSNNAKYDPKAIIAALTCKKPDQHFKPYLKQHLPKRLHYANNRRIEDIHLLVERRWHVARKPLDCFFQGDHGFDNKVNSMQTVFVGYGPTFKYKTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPTMPEEVTRPNYPGIMYLQSDFDLGCTCDDERHLLYGRPAVLYRTRYDILYHTDFESGYSEIFLMPLWTSYTVSKQAEVSSVPDHLTSCVRPDVRVSPSFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAFKRVWNYFQRVLVKKYASERNGVNVISGPIFDYDYDGLHDTEDKIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNEESCNSSEDESKWVEELMKMHTARVRDIEHLTSLDFFRKTSRSYPEILTLKTYLHTYE 860
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454     ||472       482       492       502       512       522       532       542       552       562       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854      
                                                                                                                                                                                                                                                                                                                                                                                                                                               460|                                                                                                   571|                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                                                                                                                                                                                                                                469                                                                                                    594

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4ZG7)

(no "CATH Domain" information available for 4ZG7)

(no "Pfam Domain" information available for 4ZG7)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gln A:310 - Pro A:311	[ RasMol ]
		Pro A:71 - Pro A:72	[ RasMol ]
		Tyr A:206 - Pro A:207	[ RasMol ]

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	4zg7
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	ENPP2_HUMAN \| Q13822	:	4zg6 4zg9 4zga 5kxa

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 17)

Sites (16, 16)

SS Bonds (15, 15)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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Gene Ontology (34, 34)

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