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(-) Description

Title :  SE-PBP ACCA FROM A. TUMEFACIENS C58 IN COMPLEX WITH AGROCINOPINE A
 
Authors :  A. El Sahili, B. G. Guimaraes, S. Morera
Date :  20 Apr 15  (Deposition) - 19 Aug 15  (Release) - 19 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Pbp From Class C, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. El Sahili, S. Z. Li, J. Lang, C. Virus, S. Planamente, M. Ahmar, B. G. Guimaraes, M. Aumont-Nicaise, A. Vigouroux, L. Soulere, J. Reader, Y. Queneau, D. Faure, S. Morera
A Pyranose-2-Phosphate Motif Is Responsible For Both Antibiotic Import And Quorum-Sensing Regulation In Agrobacterium Tumefaciens.
Plos Pathog. V. 11 05071 2015
PubMed-ID: 26244338  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005071

(-) Compounds

Molecule 1 - ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A AND B)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ACCA, ATU6139
    Organism Scientific: AGROBACTERIUM TUMEFACIENS (STRAIN C58 / ATCC 33970)
    Organism Taxid: 176299

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric/Biological Unit (2, 19)
No.NameCountTypeFull Name
1AGR1Ligand/Ion[(2R,3S,4S,5S)-2,5-BIS(HYDROXYMETHYL)-5-[(2R,3R,4R,5R,6R)-6-(HYDROXYMETHYL)-3,4,5-TRIS(OXIDANYL)OXAN-2-YL]OXY-4-OXIDANYL-OXOLAN-3-YL] [(2R,3R,4S,5S)-2,4,5-TRIS(OXIDANYL)OXAN-3-YL] HYDROGEN PHOSPHATE
2MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:42 , PRO A:43 , ASN A:44 , SER A:53 , ASN A:54 , VAL A:55 , TRP A:178 , ASN A:284 , MSE A:372 , TYR A:375 , TYR A:376 , TYR A:402 , GLY A:405 , PHE A:407 , TRP A:418 , SER A:419 , ASN A:420 , GLY A:421 , GLU A:434 , GLU A:510binding site for residue AGR A 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZE9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:252 -Gly A:253
2Ala A:429 -Thr A:430

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZE9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZE9)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZE9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee................hhhhhhhhh...eee..hhhhh......eee..eeeeee....eeeeee............hhhhhhhhh......hhhhhhh..hhhhhh......eeee..eeeee......hhhhhhh.......hhhhhhhhhhhhhhhh......eeeeeee...eeeeee............eeeeee..hhhhhhhhhhh....eeeeehhhhhhhhhh...eeeeeee..eeeeeee...hhhhhhhhhhhhhhhh.hhhhhhhhh............hhhhhhhh.........hhhhhhhhhhhh......eeeee......hhhhhhhhhhhhhhh....eeeee......hhhhh.eeeeeee........hhhhhhh..hhhhhh.....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeee..eeeeeee..ee...............ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ze9 A  32 RRALRLGVNGLPNSLEPVNAISNVGPRIVNQIFDTLIARDFFAKGAPGNAIDLVPALAESWERIDEKSVRFKLRQKVmFHDGVELTADDVAYTFSSERLWGPEAIKKIPLGKSYSLDFDEPVVEDKYTVTLRTKTPSYLIETFVASWmSRIVPKEYYKKLGAVDFGNKPVGTGPYKFVEFVAGDRVVLEANDAYWGPKPTASKITYQIVAEPATRVAGLISGEYDIITTLTPDDIQLINSYPDLETRGTLIENFHmFTFNmNQEVFKDKKLRRALALAVNRPImVEALWKKQASIPAGFNFPNYGETFDPKRKAmEYNVEEAKRLVKESGYDGTPITYHTmGNYYANAmPALmmmIEmWKQIGVNVVmKTYAPGFPPDNQTWmRNWSNGQWmTDAYATIVPEFGPNGQVQKRWGWKAPAEFNELCQKVTVLPNGKERFDAYNRmRDIFEEEAPAVILYQPYDVYAARKDVHWKPVSFEmmEFRNNLSFG 521
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281     | 291|      301       311   |   321       331       341    |  351       361       371|      381  |||  391       401   ||  412  |    422 |     432       442       452       462       472   |   482       492       502       512         
                                                                                                       109-MSE                                                               179-MSE                                                                                                     287-MSE|                    315-MSE                        346-MSE                   372-MSE 380-MSE||  |       399-MSE05|     415-MSE  424-MSE                                             476-MSE                            511-MSE      
                                                                                                                                                                                                                                                                                              292-MSE                                                                                     384-MSE|              407                                                                                                      512-MSE     
                                                                                                                                                                                                                                                                                                                                                                                           385-MSE                                                                                                                                   
                                                                                                                                                                                                                                                                                                                                                                                            386-MSE                                                                                                                                  
                                                                                                                                                                                                                                                                                                                                                                                               389-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZE9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZE9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZE9)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:429 - Thr A:430   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q7D2F4_AGRFC | Q7D2F4: 4zei
UniProtKB/TrEMBL
        Q7D2F4_AGRFC | Q7D2F4: 4ra1 4ze8 4zeb 4zec 4zed

(-) Related Entries Specified in the PDB File

4ra1 4ze8