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(-) Description

Title :  NOVEL INHIBITORS OF BACTERIAL METHIONINE AMINOPEPTIDASE WITH BROAD-SPECTRUM BIOCHEMICAL ACTIVITY
 
Authors :  J. A. Rose, S. D. Lahiri, D. C. Mckinney, R. Albert, M. Morningstar, A. B. S. F. Fisher, P. R. Fleming
Date :  07 Apr 15  (Deposition) - 13 Apr 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.43
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Antibacterial, Methionine Aminopeptidase, Azepinone, Structure-Based Design, Drug Discovery, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Rose, S. D. Lahiri, D. C. Mckinney, R. Albert, M. Morningstar, A. B. Shapiro, S. F. Fisher, P. R. Fleming
Novel Inhibitors Of Bacterial Methionine Aminopeptidase Wit Broad-Spectrum Biochemical Activity
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METHIONINE AMINOPEPTIDASE
    Chains: A, B
    EC Number: 3.4.11.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET50B(+)
    Expression System Strain: ROSETTA(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MAP, Z0178, ECS0170
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: METAP, PEPTIDASE M, MAP

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
14L92Ligand/IonN~2~-[(3,5-DIFLUOROPHENYL)ACETYL]-N-[(3S,7R)-1-METHYL-2-OXO-7-PHENYL-2,3,4,7-TETRAHYDRO-1H-AZEPIN-3-YL]-L-ALANINAMIDE
2MN2Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
14L91Ligand/IonN~2~-[(3,5-DIFLUOROPHENYL)ACETYL]-N-[(3S,7R)-1-METHYL-2-OXO-7-PHENYL-2,3,4,7-TETRAHYDRO-1H-AZEPIN-3-YL]-L-ALANINAMIDE
2MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
14L91Ligand/IonN~2~-[(3,5-DIFLUOROPHENYL)ACETYL]-N-[(3S,7R)-1-METHYL-2-OXO-7-PHENYL-2,3,4,7-TETRAHYDRO-1H-AZEPIN-3-YL]-L-ALANINAMIDE
2MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:108 , HIS A:171 , GLU A:204 , GLU A:235 , 4L9 A:302 , HOH A:408binding site for residue MN A 301
2AC2SOFTWARECYS A:59 , TYR A:65 , CYS A:70 , HIS A:79 , ASP A:97 , GLU A:167 , TYR A:168 , CYS A:169 , HIS A:171 , HIS A:178 , GLU A:204 , TRP A:221 , MN A:301 , HOH A:408binding site for residue 4L9 A 302
3AC3SOFTWAREASP B:108 , HIS B:171 , GLU B:204 , GLU B:235 , 4L9 B:302 , HOH B:403binding site for residue MN B 301
4AC4SOFTWARECYS B:59 , TYR B:62 , TYR B:65 , CYS B:70 , HIS B:79 , ASP B:97 , GLU B:167 , TYR B:168 , CYS B:169 , HIS B:171 , HIS B:178 , GLU B:204 , TRP B:221 , MN B:301 , HOH B:403 , HOH B:451binding site for residue 4L9 B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z7M)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:180 -Pro A:181
2Glu B:180 -Pro B:181

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z7M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z7M)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z7M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...ee...hhhhh....eeee..eee..............eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..ee.....eee......eeeee................eeee..eee.....eee......eee.....eee..eeeee...eeee...........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z7m A   2 AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISH 262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261 


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...ee...hhhhh....eeee..eee..............eeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..ee.....eee......eeeee................eeee..eee.....eee......eee.....eee..eeeee...eeee...........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z7m B   2 AISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISH 262
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z7M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z7M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z7M)

(-) Gene Ontology  (10, 18)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MAP1_ECO57 | P0AE20: 1c21 1c22 1c23 1c24 1c27 1mat 1xnz 1yvm 2bb7 2mat 3mat 4mat
        MAP1_ECOLI | P0AE18: 1c21 1c22 1c23 1c24 1c27 1mat 1xnz 1yvm 2bb7 2evc 2evm 2evo 2gg0 2gg2 2gg3 2gg5 2gg7 2gg8 2gg9 2ggb 2ggc 2gtx 2gu4 2gu5 2gu6 2gu7 2mat 2p98 2p99 2p9a 2q92 2q93 2q94 2q95 2q96 3d27 3mat 4mat

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Z7M)