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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LNMA CYTOCHROME P450 HYDROXYLASE FROM THE LEINAMYCIN BIOSYNTHETIC PATHWAY OF STREPTOMYCES ATROOLIVACEUS S-140 AT 1.9 A RESOLUTION
 
Authors :  M. Ma, J. Lohman, J. Rudolf, M. D. Miller, H. Cao, J. Osipiuk, G. Babnigg, G. N. Phillips Jr. , A. Joachimiak, B. Shen, Midwest Center For Str Genomics (Mcsg), Enzyme Discovery For Natural Product Biosyn (Natpro)
Date :  02 Apr 15  (Deposition) - 29 Jul 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hydroxylase, Leinamycin, Heme, Monooxygenase, Oxidoreductase, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Enzyme Discovery For Natural Product Biosynthesis, Natpro (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ma, J. Lohman, J. Rudolf, M. D. Miller, H. Cao, J. Osipiuk, G. Babnigg G. N. Phillips Jr. , A. Joachimiak, B. Shen
Crystal Structure Of The Lnma Cytochrome P450 Hydroxylase From The Leinamycin Biosynthetic Pathway Of Streptomyces Atroolivaceus S-140
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CYTOCHROME P450 HYDROXYLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSF-TEV/LIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LNMA
    Organism Scientific: STREPTOMYCES ATROOLIVACEUS
    Organism Taxid: 66869
    Strain: S-140

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2PGE1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2PGE-1Ligand/IonTRIETHYLENE GLYCOL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:65 , ILE A:85 , HIS A:93 , ARG A:97 , LEU A:152 , LEU A:233 , ALA A:236 , GLY A:237 , THR A:240 , SER A:241 , GLN A:244 , ALA A:340 , PHE A:341 , HIS A:346 , CYS A:348 , LEU A:349 , GLY A:350 , ALA A:354 , HOH A:403binding site for residue HEM A 401
2AC2SOFTWAREARG B:65 , ILE B:85 , HIS B:93 , ARG B:97 , LEU B:152 , PHE B:229 , LEU B:233 , ALA B:236 , GLY B:237 , THR B:240 , SER B:241 , GLN B:244 , ALA B:340 , PHE B:341 , HIS B:346 , CYS B:348 , LEU B:349 , GLY B:350 , ALA B:354 , HOH B:403binding site for residue HEM B 401
3AC3SOFTWAREPRO B:320 , ARG B:321 , ASP B:324 , HOH B:631binding site for residue PGE B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z5P)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Tyr A:10 -Pro A:11
2Pro A:90 -Pro A:91
3His A:132 -Pro A:133
4Tyr B:10 -Pro B:11
5Pro B:90 -Pro B:91
6His B:132 -Pro B:133

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z5P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z5P)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z5P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhhhhhhhh..eeee.....eeee..hhhhhhhhhhh..ee..............hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........eee...eee..eee....eee.hhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z5p A   7 VHIYPFEGEVDGLEIHPKFAELRETDPLARVRLPYGGEGWMVTRYDDVRAANSDPRFSRAQIGEDTPRTTPDTILSLDPPEHTRLRRLLSKAFTARRMGAMQSWLEELFAGLLDGVERTGHPADIVRDLAQPFTIAVICRLLGVPYEDRGRFQHWSEVIMSTTAYSKEEAVSADASIRAYLADLVSARRAAPHDDLLGVLVSARDDDDRLTEDELITFGVTLLVAGHETSAHQLGNMVYALLTHEDQLSLLREQPELLPRAVEELLRFVPLGNGVGNARIALEDVELSGGTVRAGEGVVAAAVNANRDPRAFDDPDRLDITREKNPHLAFGHGAHYCLGAQLARMELRVAIGGLLERFPGLRLAVPADQVEWKTGGLFRGPQRLPIAW 399
                                    16        26        36        46        56        66        76||      91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
                                                                                                 77|                                                                                                                                                                                                                                                                                                                            
                                                                                                  83                                                                                                                                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhhhhhhhh..eeee.....eeee..hhhhhhhhhhh..ee..............hhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........eee...eee..eee....eee.hhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z5p B   7 VHIYPFEGEVDGLEIHPKFAELRETDPLARVRLPYGGEGWMVTRYDDVRAANSDPRFSRAQIGEDTPRTTPDTILSLDPPEHTRLRRLLSKAFTARRMGAMQSWLEELFAGLLDGVERTGHPADIVRDLAQPFTIAVICRLLGVPYEDRGRFQHWSEVIMSTTAYSKEEAVSADASIRAYLADLVSARRAAPHDDLLGVLVSARDDDDRLTEDELITFGVTLLVAGHETSAHQLGNMVYALLTHEDQLSLLREQPELLPRAVEELLRFVPLGNGVGNARIALEDVELSGGTVRAGEGVVAAAVNANRDPRAFDDPDRLDITREKNPHLAFGHGAHYCLGAQLARMELRVAIGGLLERFPGLRLAVPADQVEWKTGGLFRGPQRLPIAW 399
                                    16        26        36        46        56        66        76||      91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391        
                                                                                                 77|                                                                                                                                                                                                                                                                                                                            
                                                                                                  83
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z5P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z5P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z5P)

(-) Gene Ontology  (7, 7)

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4z5q