4Z48 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A DUF1329 FAMILY PROTEIN (DESPIG_00262) FROM DESULFOVIBRIO PIGER ATCC 29098 AT 1.75 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   01 Apr 15 (Deposition) - 22 Apr 15 (Release) - 22 Apr 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Duf1329 Family Protein (Despig_00262 From Desulfovibrio Piger Atcc 29098 At 1. 75 A Resolution
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Common	:	BACTERIA
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	PB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DESPIG_00262
	Organism Scientific	:	DESULFOVIBRIO PIGER ATCC 29098
	Organism Taxid	:	411464

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 21)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CL	2	Ligand/Ion	CHLORIDE ION
3	IOD	7	Ligand/Ion	IODIDE ION
4	MSE	10	Mod. Amino Acid	SELENOMETHIONINE
5	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	IOD	3	Ligand/Ion	IODIDE ION
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (3, 10)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	IOD	4	Ligand/Ion	IODIDE ION
4	MSE	5	Mod. Amino Acid	SELENOMETHIONINE
5	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:68	binding site for residue IOD A 301
02	AC2	SOFTWARE	ARG A:92	binding site for residue IOD A 303
03	AC3	SOFTWARE	ARG A:127	binding site for residue CL A 304
04	AC4	SOFTWARE	PHE B:70 , THR B:72 , LEU B:142 , ILE B:147 , THR B:229 , VAL B:230 , TRP B:248 , HOH B:433 , HOH B:523	binding site for residue 1PE B 301
05	AC5	SOFTWARE	ARG B:211	binding site for residue IOD B 302
06	AC6	SOFTWARE	HOH A:468 , ARG B:68 , ARG B:139	binding site for residue IOD B 303
07	AC7	SOFTWARE	GLN A:232	binding site for residue IOD B 304
08	AC8	SOFTWARE	GLU B:222 , LYS B:223	binding site for residue IOD B 305
09	AC9	SOFTWARE	ARG B:139	binding site for residue CL B 306
10	AD1	SOFTWARE	TYR B:106 , GLY B:108 , ASP B:152 , GLU B:155 , HOH B:436 , HOH B:512	binding site for residue NA B 307

(no "SS Bond" information available for 4Z48)

Asymmetric Unit

No.	Residues
1	Arg A:92	-	Pro A:93
2	Arg B:92	-	Pro B:93

(no "SAP(SNP)/Variant" information available for 4Z48)

(no "PROSITE Motif" information available for 4Z48)

(no "Exon" information available for 4Z48)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....eeeeeeeeeeee..eeeeeeeeeeeeee.....eeeeeeeeee.......eeeeee........eeeeee....eeee.hhhhhhh.......hhhhhh...hhh.eeeeeeeeeee..eeeeeeeeee.......eeeeeeeee.....eeeeeeee....eeeeeeeeeeeee..eeeeeeeeeee....eeeeeeeeeeee....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z48 A  29 TDPVKAGYDLAVRmDQVDTSQDSYSEAVmSINRGGKVLTRSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDmWVYLPAESLVRRISGSSKFASFmRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDGIWTVTQmRVERPREGSFTVIDWSNLRYDVGLSDAYFEHSALQ 268
                                    38   |    48        58        68        78        88        98       108      |118       128       138       148       158       168       178       188       198       208       218       228    |  238       248       258       268
                                        42-MSE         57-MSE                                                   115-MSE                138-MSE                                                                                        233-MSE

Chain B from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....eeeeeeeeeeee..eeeeeeeeeeeeee.....eeeeeeeeee.......eeeeee........eeeeee....eeee.hhhhhhh.......hhhhhh...hhh.eeeeeeeeeee..eeeeeeeeee.......eeeeeeeee.....eeeeeeee....eeeeeeeeeeeee..eeeeeeeeeee....eeeeeeeeeeee....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z48 B  29 TDPVKAGYDLAVRmDQVDTSQDSYSEAVmSINRGGKVLTRSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDmWVYLPAESLVRRISGSSKFASFmRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQYSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFSRQEKIDGIWTVTQmRVERPREGSFTVIDWSNLRYDVGLSDAYFEHSALQ 268
                                    38   |    48        58        68        78        88        98       108      |118       128       138       148       158       168       178       188       198       208       218       228    |  238       248       258       268
                                        42-MSE         57-MSE                                                   115-MSE                138-MSE                                                                                        233-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4Z48)

(no "CATH Domain" information available for 4Z48)

(no "Pfam Domain" information available for 4Z48)

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(no "Gene Ontology" information available for 4Z48)

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	Cis Peptide Bonds
		Arg A:92 - Pro A:93	[ RasMol ]
		Arg B:92 - Pro B:93	[ RasMol ]

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	4z48
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Description

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Chains, Units

Ligands, Modified Residues, Ions (5, 21)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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