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(-) Description

Title :  FICIN ISOFORM C CRYSTAL FORM II
 
Authors :  M. Azarkan, D. Baeyens-Volant, R. Loris
Date :  24 Mar 15  (Deposition) - 13 Apr 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Cystein Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Baldacci-Cresp, J. A. Rodriguez Buitrago, N. M'Rabet, R. Loris, M. Baucher, D. Baeyens-Volant, M. Azarkan
Crystal Structure Of Four Variants Of The Protease Ficin From The Common Fig
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FICIN ISOFORM C
    Chains: A
    EC Number: 3.4.22.3
    Organism Common: COMMON FIG
    Organism Scientific: FICUS CARICA
    Organism Taxid: 3494

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
116P1Ligand/Ion3,6,9,12,15,18-HEXAOXAICOSANE
2SCH1Mod. Amino AcidS-METHYL-THIO-CYSTEINE
3SO45Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESCH A:25 , TRP A:26 , GLY A:67 , GLY A:68 , HIS A:162 , ALA A:163 , HOH A:471 , HOH A:521 , HOH A:522binding site for residue SO4 A 301
2AC2SOFTWARESER A:112 , GLU A:114 , GLY A:141 , ARG A:142 , HOH A:468 , HOH A:476binding site for residue SO4 A 302
3AC3SOFTWAREGLY A:150 , GLU A:172 , GLU A:190 , LYS A:195binding site for residue SO4 A 303
4AC4SOFTWAREILE A:16 , ARG A:17 , ASN A:18 , GLY A:185 , THR A:186 , HOH A:446binding site for residue SO4 A 304
5AC5SOFTWARETRP A:69 , GLN A:105 , HOH A:448 , HOH A:487binding site for residue SO4 A 305
6AC6SOFTWAREASN A:18 , GLY A:20 , ARG A:21 , TYR A:91 , TRP A:184binding site for residue 16P A 306
7AC7SOFTWAREGLN A:19 , GLY A:23 , SER A:24 , ALA A:27 , PHE A:28 , SER A:29 , VAL A:30 , LEU A:53 , SER A:59 , GLY A:64 , GLY A:67 , GLY A:68 , HIS A:162 , ALA A:163 , VAL A:164 , ASN A:182 , SER A:183 , TRP A:184 , SO4 A:301binding site for Ligand residues SCH A 25 through TRP A 26 bound to SER A 24

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:65
2A:56 -A:98
3A:156 -A:207

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Cys A:156 -Gly A:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YYV)

(-) Exons   (0, 0)

(no "Exon" information available for 4YYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.................hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.hhhhh.....hhhhhhhhhhhhh.................hhhhhh.......eeee....hhhhhhhhhhhh.eeeeeeeehhhhhh....ee....eeeeeeeeeeeeeeee..eeeeeee...........eeeee.......hhhhh....eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yyv A   1 LPETVDWRIQGAVNPIRNQGRCGSxWAFSVVVVVEGISKIVTDELPSLSEQQLVDCATSYKNLGCSGGWMTKAYDYIIKNGGITSQSNYPYTAKKGECNKDLASQIVATIDSYEHVPRNNENALKKAVANQPVSVTIEAGGRAFELYKSGVFVGSCGTKLDHAVVAIGYGSENDVDYWLVRNSWGTNWGERGYIKLQRNVAEPTGKCGIAMQSTYPVKKTA 221
                                    10        20    |   30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 
                                                   25-SCH
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YYV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4YYV)

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  Cis Peptide Bonds
    Cys A:156 - Gly A:157   [ RasMol ]  
 

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  4yyv
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  A0A182DW09_F | A0A182DW09
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 Related Entries

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UniProtKB/TrEMBL
        A0A182DW09_F | A0A182DW09: 4yyu

(-) Related Entries Specified in the PDB File

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