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(-) Description

Title :  STRUCTURE OF AMINOACID RACEMASE IN APO-FORM
 
Authors :  H. Sakuraba, Y. Mutaguchi, J. Hayashi, T. Ohshima
Date :  17 Mar 15  (Deposition) - 20 Apr 16  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.77
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Fold Type I Of Plp-Dependent Enzyme, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Hayashi, Y. Mutaguchi, Y. Minemura, N. Nakagawa, K. Yoneda, T. Ohmori, T. Ohshima, H. Sakuraba
Crystal Structure Of The Novel Amino-Acid Racemase Isoleucine 2-Epimerase From Lactobacillus Buchneri.
Acta Crystallogr D Struct V. 73 428 2017 Biol
PubMed-ID: 28471367  |  Reference-DOI: 10.1107/S2059798317005332

(-) Compounds

Molecule 1 - PUTATIVE 4-AMINOBUTYRATE AMINOTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCOLD PROS2
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: LACTOBACILLUS BUCHNERI
    Organism Taxid: 1581

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YSV)

(-) Sites  (0, 0)

(no "Site" information available for 4YSV)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YSV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:164 -Pro A:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YSV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YSV)

(-) Exons   (0, 0)

(no "Exon" information available for 4YSV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..eeee....eeee..........hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhh..hhhhhh........eeee............hhhhhhhhhhhhhhhhhh...hhh.eeeeee..ee.....ee.hhhhhhhhhhhhhhh..eeeee............hhhhhh......eeeehhhhhh....eeeeeehhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee....eeeee.........hhhhhhhhhhhhhhh.ee.eee...eeee......hhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ysv A  29 LVIDHAHGATLVDVDGNKYIDLLSAINVGHTHEKVVKAIADQAQKLIHYTPAYFHHVPGMELSEKLAKIAPGNSPKMVSFGNSGSDANDAIIKFARAYTGRQYIVSYMGSYHGSTYGSQTLSGSSLNMTRKIGPMLPSVVHVPYPDSYRTYPGETEHDVSLRYFNEFKKPFESFLPADETACVLIEPIQGDGGIIKAPEEYMQLVYKFCHEHGILFAIDEVNQGLGRTGKMWAIQQFKDIEPDLMSVGKSLASGMPLSAVIGKKEVMQSLTAGNPVCSAASLATLDVIEYEGLVEKSATDGAYAKQRFLEMQQRHPMIGDVRMWGLNGGIELVKDPKTKEPDSDAATKVIYYAFAHGVVIITLAGNILRFQPPLVIPREQLDQALQVLDDAFTAVENGEVTIP 442
                                    38        48  ||    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301|      319       329       339       349       359       369       379       389       399       409       419       429       439   
                                                 51|                                                                                                                                                                                                                                                   301|                                                                                                                                    
                                                  55                                                                                                                                                                                                                                                    310
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YSV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YSV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YSV)

(-) Gene Ontology  (4, 4)

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  Cis Peptide Bonds
    Gly A:164 - Pro A:165   [ RasMol ]  
 
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  4ysv
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ILE2E_LACBU | M1GRN3: 4ysn 5ll2 5ll3 5wya 5wyf

(-) Related Entries Specified in the PDB File

4ysn