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(-) Description

Title :  STRUCTURE OF PVCB, AN FE, ALPHA-KETOGLUTARATE DEPENDENT OXYGENASE FROM AN ISONITRILE SYNTHETIC PATHWAY
 
Authors :  J. Zhu, G. M. Lippa, A. M. Gulick, P. A. Tipton
Date :  05 Mar 15  (Deposition) - 29 Apr 15  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (3x)
Biol. Unit 2:  X  (6x)
Keywords :  Oxygenase, Fe/A-Ketoglutarate, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhu, G. M. Lippa, A. M. Gulick, P. A. Tipton
Examining Reaction Specificity In Pvcb, A Source Of Diversity In Isonitrile-Containing Natural Products.
Biochemistry V. 54 2659 2015
PubMed-ID: 25866990  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B00255

(-) Compounds

Molecule 1 - PYOVERDINE BIOSYNTHESIS PROTEIN PVCB
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: PAK_03057, Y880_0112155
    Organism Scientific: PSEUDOMONAS AERUGINOSA (PAK)
    Organism Taxid: 1009714
    Strain: PAK

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (3x): X
Biological Unit 2 (6x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1GOL9Ligand/IonGLYCEROL
Biological Unit 2 (1, 18)
No.NameCountTypeFull Name
1GOL18Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN X:44 , ASP X:76 , PHE X:77 , GLU X:280 , HOH X:439 , HOH X:530binding site for residue GOL X 301
2AC2SOFTWAREASP X:17 , GLN X:19 , ARG X:138 , HIS X:239 , ALA X:241binding site for residue GOL X 302
3AC3SOFTWARELEU X:82 , TRP X:83 , PRO X:84 , LEU X:116 , HOH X:406binding site for residue GOL X 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YLM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu X:280 -Pro X:281

 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee............eeeee.....hhhhhhhhhhhhhhhhhheeee.......hhhhhhhhhhhhh.ee.......eeeee............eeee.......eeeeeeeeeeee.........eeeeehhhhhhhhhhhhhhhhhhheeeee...eeeee.eee......eee.......eee..hhhhhhhhhhhhhhhhh....eeee......eeeee...eeeee........eeeeeeeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ylm X  -1 GHMNAYLSDQPVRLSPLRDEQGNQPRFGLLLEPGRPGMHVGELPAQWLKGLARSHHLLLLRGFAAFADAESLTRYCHDFGEVMLWPFGAVLELVEQEGAEHIFANNYVPLHWDGMYLETVPEFQVFHCVDAPGDSDGGRTTFSSTPAALQLADSSELELWRRASGRYQRSSRSAAPIVERHPRREFPILRFCEPPFHYDGIAPEQRGELLASLRRCLYHPQAHYAHRWRSDDLVIADNLTLLHGREAFAHRAPRHLRRVHIHAEPALRNPHLQR 290
                                     8        18        28        38        48        58        68        78        88        98|      109       119       129       139       149       159       174       184       194    || 216       226       236       246       256       266       276       286    
                                                                                                                              98|                                                                 168|                      199|                                                                              
                                                                                                                              100                                                                  174                       212
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YLM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YLM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YLM)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4YLM)

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(-) Related Entries Specified in the PDB File

3eat 3EAT IS THE SAME PROTEIN AT A LOWER RESOLUTION