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(-) Description

Title :  CRYSTAL STRUCTURE OF EUKARYOTIC MRE11 CATALYTIC DOMAIN FROM CHAETOMIUM THERMOPHILUM
 
Authors :  F. U. Seifert, K. Lammens, K. -P. Hopfner
Date :  04 Mar 15  (Deposition) - 03 Jun 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.78
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nuclease, Hydrolase, Catalytic Domain, Nuclear Proteins, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. U. Seifert, K. Lammens, K. P. Hopfner
Structure Of The Catalytic Domain Of Mre11 From Chaetomium Thermophilum.
Acta Crystallogr. , Sect. F V. 71 752 2015
PubMed-ID: 26057807  |  Reference-DOI: 10.1107/S2053230X15007566

(-) Compounds

Molecule 1 - MRE11
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CTHT_0007600
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 759272
    Strain: DSM 1495 / CBS 144.50 / IMI 039719

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:17 , HIS A:19 , ASP A:57 , HIS A:243 , MN A:602binding site for residue MN A 601
2AC2SOFTWAREASP A:17 , ASP A:57 , ASN A:124 , HIS A:213 , HIS A:241 , MN A:601binding site for residue MN A 602
3AC3SOFTWAREASP B:17 , HIS B:19 , ASP B:57 , HIS B:243 , MN B:602binding site for residue MN B 601
4AC4SOFTWAREASP B:17 , ASP B:57 , ASN B:124 , HIS B:213 , HIS B:241 , MN B:601binding site for residue MN B 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YKE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YKE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YKE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YKE)

(-) Exons   (0, 0)

(no "Exon" information available for 4YKE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:404
                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee..hhhhhh......hhhhh........eee..............hhhhhhhhh...ee.........eee..eeeee..eeeeeee....hhhhhhhhhhh..eee.......eeeeee.............hhhhh.....eeee......eeeeee......eeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee.......hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeee............hhhhhhhh...........eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yke A   4 TAGPDTIRILVSTDNHVGYEERDPIRKDDSWRTFDEIMQLARTKDVDMVLLGGDLFHDNKPSRKAMYQVMRSLRKNCLGMKPCELEFLSDPAEVFEGAFPHVNYYDPDINVSIPVFSIHGNHDDPSGDGHLCSLDLLQVAGLVNYFGRVPEADNIHVKPILLQKGKTKLALYGMSNVRDERIHRTFRDNKVRFYRPTGDWFNLLTLHQNHYAHTPTGYLSENMLPDFLDLVIWGHEHECLIDPKKNPETGFHVMQPGSSIATSLVPGEAVPKHIAILSITGKSFEVEKIPLRTVRPFVIREITLATDKRFKGLEKKQDNRQEVTKRLMQIVEEMIAEANEMWRSLHEDSQDDEEQPLPLIRLKVEYSSPEGTKFEVENPQRFSNRFAGKVANQNDVVHFYRKKT 412
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193     ||206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356  ||   368       378       388       398       408    
                                                                                                                                                                                                                             199|                                                                                                                                                         359|                                                  
                                                                                                                                                                                                                              203                                                                                                                                                          362                                                  


Chain B from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee...............hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhh.......ee..............hhhhh........eee..............hhhhhhhhh...ee.........eee..eeeee..eeeeeeee...hhhhhhhhhhh..eee..........eeeeee.............hhhhh.....eeee......eeeeee......eeee.........hhhhhh..eeeeeeee..eeeeeeee......eeeeeee......hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeeee............hhhhhhhh...........eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yke B   4 TAGPDTIRILVSTDNHVGYEERDPIRKDDSWRTFDEIMQLARTKDVDMVLLGGDLFHDNKPSRKAMYQVMRSLRKNCLGMKPCELEFLSDPAEVFEGAFPHVNYYDPDINVSIPVFSIHGNHDDPSGDGHLCSLDLLQVAGLVNYFGRVPEADNIHVKPILLQKGKTKLALYGMSNVRDERIHRTFRDNKVRFYRPSQQTGDWFNLLTLHQNHYAHTPTGYLSENMLPDFLDLVIWGHEHECLIDPKKNPETGFHVMQPGSSIATSLVPGEAVPKHIAILSITGKSFEVEKIPLRTVRPFVIREITLATDKRFKGLEKKQDNRQEVTKRLMQIVEEMIAEANEMWRSLHEDSQDDQPLPLIRLKVEYSSPEGTKFEVENPQRFSNRFAGKVANQNDVVHFYRKKT 412
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353    || 367       377       387       397       407     
                                                                                                                                                                                                                                                                                                                                                                                            358|                                                 
                                                                                                                                                                                                                                                                                                                                                                                             363
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YKE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YKE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YKE)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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        G0RYR3_CHATD | G0RYR3: 5da9

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