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(-) Description

Title :  DIHYDROOROTASE FROM BACILLUS ANTHRACIS WITH SUBSTRATE BOUND
 
Authors :  H. Lei, B. D. Santarsiero, A. J. Rice, H. Lee, M. E. Johnson
Date :  02 Mar 15  (Deposition) - 10 Aug 16  (Release) - 14 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. J. Rice, H. Lei, B. D. Santarsiero, H. Lee, M. E. Johnson
Ca-Asp Bound X-Ray Structure And Inhibition Of Bacillus Anthracis Dihydroorotase (Dhoase).
Bioorg. Med. Chem. V. 24 4536 2016
PubMed-ID: 27499369  |  Reference-DOI: 10.1016/J.BMC.2016.07.055

(-) Compounds

Molecule 1 - DIHYDROOROTASE
    Chains: A, B
    EC Number: 3.5.2.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PYRC, BA_4027, GBAA_4027, BAS3739
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392
    Synonym: DHOASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1NCD2Ligand/IonN-CARBAMOYL-L-ASPARTATE
2ZN4Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:59 , HIS A:61 , ASP A:151 , ASP A:304 , ZN A:502 , NCD A:503binding site for residue ZN A 501
2AC2SOFTWAREASP A:151 , HIS A:178 , HIS A:231 , ZN A:501 , NCD A:503binding site for residue ZN A 502
3AC3SOFTWAREHIS A:61 , ARG A:63 , ASN A:93 , MET A:276 , ASN A:277 , ASP A:304 , HIS A:308 , PHE A:322 , GLY A:323 , ZN A:501 , ZN A:502binding site for residue NCD A 503
4AC4SOFTWAREHIS B:59 , HIS B:61 , ASP B:151 , ASP B:304 , ZN B:502 , NCD B:503binding site for residue ZN B 501
5AC5SOFTWAREASP B:151 , HIS B:178 , HIS B:231 , ZN B:501 , NCD B:503binding site for residue ZN B 502
6AC6SOFTWAREHIS B:61 , ARG B:63 , ASN B:93 , GLY B:152 , HIS B:178 , MET B:276 , ASN B:277 , ASP B:304 , ALA B:306 , HIS B:308 , PHE B:322 , GLY B:323 , ZN B:501 , ZN B:502binding site for residue NCD B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YIW)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Glu A:64 -Pro A:65
2Arg A:95 -Pro A:96
3Asn A:277 -Pro A:278
4Glu B:64 -Pro B:65
5Arg B:95 -Pro B:96
6Asn B:277 -Pro B:278

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YIW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YIW)

(-) Exons   (0, 0)

(no "Exon" information available for 4YIW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.....eeeeeeeee..eeee..........eeee....eeee.eeeeee...........hhhhhhhhhhhhheeeeee.........hhhhhhhhhhhhhhhh..ee......hhhhh.....hhhhhhhh.............hhhhhhhhhhhhhhh...eee...hhhhh....ee.hhhhhhhh..ee.hhhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....ee.......hhhhhh...........hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.............eeeee....ee.hhhhh............ee..eeeeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yiw A   2 NYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKES 425
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421    


Chain B from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeee.....eeeeeeeee..eeeeee........eeee....eeee.eeeeee...........hhhhhhhhhhhh.eeeeee.........hhhhhhhhhhhhhhhh..ee...ee.hhhhh.....hhhhhhhh....ee.......hhhhhhhhhhhhhhh...eee...hhhhh....ee.hhhhhhh...ee.hhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhh...eeeeehhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....ee.......hhhhhhh.............hhhhhhhhhh......hhhhhhhhhhhhhhhhhh............eeeeee....ee.hhhhh............ee..eeeeeee..eeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yiw B   1 MNYLFKNGRYMNEEGKIVATDLLVQDGKIAKVAENITADNAEVIDVNGKLIAPGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMPNTRPVPDCREHMEDLQNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAMKRAAKLNMAVVAHCEENTLINKGCVHEGKFSEKHGLNGIPSVCESVHIARDILLAEAADCHYHVCHVSTKGSVRVIRDAKRAGIKVTAEVTPHHLVLCEDDIPSADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEKAQGIERAPFGITGFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFGLEAGRLKEGRTADITIIDLEQEEEIDPTTFLSKGKNTPFAGWKCQGWPVMTIVGGKIAWQKESA 426
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YIW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YIW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YIW)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYRC_BACAN | Q81WF0: 3mpg

(-) Related Entries Specified in the PDB File

3mpg STRUCTURE OF THE SAME PROTEIN