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(-) Description

Title :  CRYSTAL STRUCTURE OF LIGG IN COMPLEX WITH B-GLUTATHIONYL-ACETOVERATRONE (GS-AV) FROM SPHINGOBIUM SP. STRAIN SYK-6
 
Authors :  J. H. Pereira, R. P. Mcandrew, R. A. Heins, K. L. Sale, B. A. Simmons, P. D.
Date :  17 Feb 15  (Deposition) - 09 Mar 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Gsh-Lyase Gsh-Dependent, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Pereira, R. A. Heins, D. L. Gall, R. P. Mcandrew, K. Deng, K. C. Holland, T. J. Donohue, D. R. Noguera, B. A. Simmons, K. L. Sale, J. Ralph, P. D. Adams
Structural And Biochemical Characterization Of The Early An Late Enzymes In The Lignin Beta-Aryl Ether Cleavage Pathway From Sphingobium Sp. Syk-6.
J. Biol. Chem. V. 291 10228 2016
PubMed-ID: 26940872  |  Reference-DOI: 10.1074/JBC.M115.700427

(-) Compounds

Molecule 1 - GLUTATHIONE S-TRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LIGG, SLG_08670
    Organism Scientific: SPHINGOBIUM SP. SYK-6
    Organism Taxid: 627192

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2GAZ1Ligand/IonL-GAMMA-GLUTAMYL-3-{(E)-[2-(3,4-DIMETHOXYPHENYL)-2-OXOETHYLIDENE]-LAMBDA~4~-SULFANYL}-L-ALANYLGLYCINE
3MSE8Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (4, 24)
No.NameCountTypeFull Name
1CSO4Mod. Amino AcidS-HYDROXYCYSTEINE
2GAZ2Ligand/IonL-GAMMA-GLUTAMYL-3-{(E)-[2-(3,4-DIMETHOXYPHENYL)-2-OXOETHYLIDENE]-LAMBDA~4~-SULFANYL}-L-ALANYLGLYCINE
3MSE16Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:42 , ARG A:43 , SER A:206 , LYS A:207 , GLU A:208 , HOH A:442 , HOH A:513 , HOH A:605binding site for residue SO4 A 301
2AC2SOFTWAREILE A:12 , CSO A:15 , PHE A:17 , THR A:55 , ALA A:56 , LEU A:57 , PRO A:58 , GLU A:70 , SER A:71 , SER A:109 , TYR A:113 , LEU A:117 , TYR A:217 , ASN A:223 , HOH A:494 , HOH A:556binding site for residue GAZ A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YAV)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:57 -Pro A:58
2Glu A:84 -Pro A:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YAV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YAV)

(-) Exons   (0, 0)

(no "Exon" information available for 4YAV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhhhhhhhhh..eeeeee.......hhhhhh.........eee.....eeehhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...................hhhhh..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yav A   4 PQELTIYHIPGcPFSERVEImLELKGLRmKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESmVILRYLEQRYPEPAVAHPDPFcHAVEGmLAELAGPFSGAGYRmILNREIGKREEmRAAVDAEFGKVDAFLKRYATGSDFLFDDRFGWAEVAFTPmFKRLWFLDYYEDYEVPANFDRVLRWRAACTAHPAAQYRSKEELLKLYYDYTQGGGNGRIPEGRSISSFSPDVDWRTRPmPPRDKWGHAATDAELGLTR 265
                                    13 |      23|       33        43        53        63        73        83        93|     |103       113 |     123   |   133       143       153       163   |   173       183       193       203       213       223       233       243  |    253       263  
                                      15-CSO   24-MSE  32-MSE                                  72-MSE                94-CSO |            115-MSE     127-MSE                                 167-MSE                                                                        246-MSE               
                                                                                                                          100-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YAV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YAV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YAV)

(-) Gene Ontology  (1, 1)

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 Related Entries

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        G2IN94_9SPHN | G2IN94: 4yap

(-) Related Entries Specified in the PDB File

4y98 4y9d 4ya6 4yac 4yae 4yag 4yai 4yam 4yan 4yap