4Y00 - JenaLib

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Title :   CRYSTAL STRUCTURE OF HUMAN TDP-43 RRM1 DOMAIN WITH D169G MUTATION IN COMPLEX WITH AN UNMODIFIED SINGLE-STRANDED DNA

Authors :   C. H. Chiang, P. H. Kuo, W. Z. Yang, H. S. Yuan

Date :   05 Feb 15 (Deposition) - 10 Feb 16 (Release) - 09 Mar 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E  (1x)
Biol. Unit 2: B,F  (1x)
Biol. Unit 3: C,G  (1x)
Biol. Unit 4: D,H  (1x)

Keywords :   Rna Recognition Motif 1 Complex, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. H. Chiang, C. Grauffel, L. S. Wu, P. H. Kuo, L. G. Doudeva, C. Lim, C. K. Shen, H. S. Yuan
Structural Analysis Of Disease-Related Tdp-43 D169G Mutation: Linking Enhanced Stability And Caspase Cleavage Efficiency To Protein Accumulation
Sci Rep V. 6 21581 2016
PubMed-ID: 26883171 | Reference-DOI: 10.1038/SREP21581

Molecule 1 - TAR DNA-BINDING PROTEIN 43
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE30
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 101-191
	Gene	:	TARDBP, TDP43
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TDP-43

*Molecule 2 - DNA (5'-D(PTPTPGPAPGPCPGPT)-3')*
	Chains	:	E, F, G, H
	Engineered	:	YES
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synthetic	:	YES

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A				E
Biological Unit 2 (1x)	:		B				F
Biological Unit 3 (1x)	:			C				G
Biological Unit 4 (1x)	:				D				H

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 4Y00)

(no "Site" information available for 4Y00)

(no "SS Bond" information available for 4Y00)

(no "Cis Peptide Bond" information available for 4Y00)

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(no "PROSITE Motif" information available for 4Y00)

(no "Exon" information available for 4Y00)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee......hhhhhhhhhh....eeeeeeee......eeeeeeeee.hhhhhhhhhh.eeee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4y00 A 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIGGRWCDCKLPNS 180
                                   112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeeeeee......eeeeeeeee.hhhhhhhhhhh.eee..eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4y00 B 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIGGRWCDCKLPNS 180
                                   112       122       132       142       152       162       172

Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee......hhhhhhhhhh....eeeeeeee......eeeeeeeee.hhhhhhhhh..eeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4y00 C 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIGGRWCDCKLPN 179
                                   112       122       132       142       152       162       172

Chain D from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhhh....eeeeeeee......eeeeeeeee.hhhhhhhhhh.eee....eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4y00 D 103 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIGGRWCDCKLPN 179
                                   112       122       132       142       152       162       172

Chain E from PDB  Type:DNA  Length:8
                                        
                 4y00 E   2 TTGAGCGT   9

Chain F from PDB  Type:DNA  Length:9
                                         
                 4y00 F   1 GTTGAGCGT   9

Chain G from PDB  Type:DNA  Length:4
                                    
                 4y00 G   4 GAGC   7

Chain H from PDB  Type:DNA  Length:3
                                   
                 4y00 H   7 CGT   9

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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	TADBP_HUMAN \| Q13148	:	1wf0 2cqg 2n2c 2n3x 2n4g 2n4h 2n4p 4bs2 4iuf 4y0f 5mrg

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