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Title :  CRYSTAL STRUCTURE OF HIRAN DOMAIN OF HUMAN HLTF IN COMPLEX WITH DNA
 
Authors :  A. Hishiki, H. Hashimoto
Date :  04 Feb 15  (Deposition) - 15 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.38
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A (1x),B (2x)
Keywords :  Dna Repair, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Hishiki, K. Hara, Y. Ikegaya, H. Yokoyama, T. Shimizu, M. Sato, H. Hashimoto
Structure Of A Novel Dna-Binding Domain Of Helicase-Like Transcription Factor (Hltf) And Its Functional Implication In Dna Damage Tolerance
J. Biol. Chem. V. 290 13215 2015
PubMed-ID: 25858588  |  Reference-DOI: 10.1074/JBC.M115.643643

(-) Compounds

Molecule 1 - (DA)(DC)(DC)(DG)(DC)(DC)(DG)(DG)(DG)(DT)(DG)(DC)(DC)
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 2 - HELICASE-LIKE TRANSCRIPTION FACTOR
    Chains: A
    EC Number: 3.6.4.-, 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6P1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 58-174
    Gene: HLTF, HIP116A, RNF80, SMARCA3, SNF2L3, ZBU1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNA-BINDING PROTEIN/PLASMINOGEN ACTIVATOR INHIBITOR 1 REGULATOR,HIP116,RING FINGER PROTEIN 80,SWI/SNF-RELATED MATRIX- ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER 3,SUCROSE NONFERMENTING PROTEIN 2-LIKE 3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A (1x)B (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4XZF)

(-) Sites  (0, 0)

(no "Site" information available for 4XZF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XZF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XZF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XZF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XZF)

(-) Exons   (0, 0)

(no "Exon" information available for 4XZF)

(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee.hhhh.......eeeeeee..........eeee.....eeeeehhhhhhhhhhhhhh...eeeeee........eeeeeeeeeehhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xzf A  53 GPLGSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGP 173
                                    62        72        82        92       102       112       122       132       142       152       162       172 


Chain B from PDB  Type:DNA  Length:13
                                             
                 4xzf B   1 ACCGCCGGGTGCC  13
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XZF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XZF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XZF)

(-) Gene Ontology  (31, 31)

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  4xzf
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  HLTF_HUMAN | Q14527
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  3.6.4.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HLTF_HUMAN | Q14527: 2mzn 4hre 4hrh 4s0n 4xzg 5bnh 5k5f

(-) Related Entries Specified in the PDB File

4xzg