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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF THE YEAST COAT NUCLEOPORIN COMPLEX, SPACE GROUP P212121
 
Authors :  T. Stuwe, A. R. Correia, D. H. Lin, M. Paduch, V. T. Lu, A. A. Kossiakoff, A
Date :  14 Jan 15  (Deposition) - 25 Mar 15  (Release) - 03 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  7.60
Chains :  Asym./Biol. Unit :  A,B,D,E,F,H,L
Keywords :  Structural Protein, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Stuwe, A. R. Correia, D. H. Lin, M. Paduch, V. T. Lu, A. A. Kossiakoff, A. Hoelz
Nuclear Pores. Architecture Of The Nuclear Pore Complex Coat.
Science V. 347 1148 2015
PubMed-ID: 25745173  |  Reference-DOI: 10.1126/SCIENCE.AAA4136

(-) Compounds

Molecule 1 - PROTEIN TRANSPORT PROTEIN SEC13
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SEC13, ANU3, YLR208W, L8167.4
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
 
Molecule 2 - NUCLEOPORIN NUP145
    Chains: B
    EC Number: 3.4.21.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP145, RAT10, YGL092W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NUCLEAR PORE PROTEIN NUP145
 
Molecule 3 - NUCLEOPORIN NUP84
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP84, YDL116W
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NUCLEAR PORE PROTEIN NUP84
 
Molecule 4 - NUCLEOPORIN NUP120
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP120, RAT2, YKL057C, YKL313, YKL314
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NUCLEAR PORE PROTEIN NUP120
 
Molecule 5 - NUCLEOPORIN NUP85
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NUP85, RAT9, YJR042W, J1624
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: NUCLEAR PORE PROTEIN NUP85
 
Molecule 6 - ANTIBODY 87 LIGHT CHAIN
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: PHAGE DISPLAY LIBRARY
 
Molecule 7 - ANTIBODY 87 HEAVY CHAIN
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: OBTAINED FROM PHAGE DISPLAY LIBRARY

 Structural Features

(-) Chains, Units

  1234567
Asymmetric/Biological Unit : ABDEFHL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4XMN)

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1H:48 -H:122
2H:177 -H:233
3L:26 -L:91
4L:137 -L:197
5L:217 -H:253

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser L:10 -Pro L:11
2Tyr L:143 -Pro L:144
3Phe H:183 -Pro H:184
4Glu H:185 -Pro H:186

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XMN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XMN)

(-) Exons   (0, 0)

(no "Exon" information available for 4XMN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:274
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....eeeeee...eeeeee......eeeeeee.....eee....hhhhh.eeeeee....eeeeee....eeeeeee......eeee...hhhhh..eeeee...eeeeeee.....eeeeeee.....eeeeee......eeeeee...eeeeee........eeeeeee.......eeee.......eeeeee.....eeeeee....................eeeeee......eeeee....eeeeee.....eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn A    8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATSRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAG  293
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157|      179       189       199       209       219       229       239       249       259       269       279       289    
                                                                                                                                                                               157|                                                                                                                           
                                                                                                                                                                                170                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....eeee.......eeee.......hhhhhhhhhhhhhhh.eeeee......eeeeee..hhhhhhhhh...hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhh......hhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhh.......hhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn B  149 YTFAKFSTGSmLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPYPQISESSLLFKDALDYmEKTSSDYNLWKLSSILFDPVSYPYKTDNDQVKmALLKKERHCRLTSWIVSQIGPEIEEKIRNSSNEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGCSIDKNISKIYKLLSGSPFEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFSLPYDDPIGVIFQLYAANENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCFLNDDKAAEDTIKRLVmREITLLRASTNDHILNRLKIPSQLIFNAQALKDRYEGSEVQNLLDLAEmAIVTSLVQNNELKTLREILNEFVSINVFEVYLKLVQETIDSLISGmKIFYVAACCNVmSQEIVSKILEKNKAKLLELPLQDLmKCTYKI  712
                                   158|      168       178       188       198       208       218      |228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508    |  518       528       538       548 ||    566   |   576|      596     ||615       631       641   ||  659 |     669   ||  686  ||  |709   
                                    159-MSE                                                           225-MSE                          258-MSE                                                                                                                                                                                                                                                        513-MSE                              550|   560|   |   576|            602|         624|       641-MSE|      |         673|     689|  |      
                                                                                                                                                                                                                                                                                                                                                                                                                                            554    566   |    587             612          631            654      |          681      703  |      
                                                                                                                                                                                                                                                                                                                                                                                                                                                       570-MSE                                                   661-MSE                  706-MSE  


Chain D from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                                
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn D  553 IESIANFSLVKSYSWLLFEASCmEGQKVLNAIVSKDDVIIPQDVTNSmRQTLAPYAVLSQFYDREDWGQALRLLLLLIEFHYLVLLVAKFLYPIFEDSVATVIEVIETKWSNLYETIIEADKSATLLKNLRKKLNFKLCQAFm  744
                                   568       578  |   |592    || 607  ||   622       632 ||    645       655|      670    || 689       699|      716  ||   731       741  |
                                 560|           581-MSE|    597|    610|   |           634|              655|           675|           699|         719|                744-MSE
                                  567                590     603     616   |            638               661            685            707          725                   
                                                                         620-MSE                                                                                           


Chain E from PDB  Type:PROTEIN  Length:896
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee............eeeee.....eeeeee.....eeeeee.....eeeeee.hhh....eeeee......hhhh.eeeee...eeeeeee.....eeeeeeehhhhhh.........ee...........eeeeee....eeeeee....eeeeee.....eee.....hhhhhhhh.............eeeeeee...eeeeee...eeeeee....eeeeeee.hhh.................eee...eeeeee.....eeeeeeee..eeeeeeeee.........eeeeeeee...........eeeeeeeee..eeeeeeeee.......eeeeeeeeeehhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.eeeeeee...eeeeee....eeeeeee.hhhhhhhhh.......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhh.......hhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn E    2 ACLSRIDANLLQYYEKPEPNNTVDLYVSGSEYSNCLLLSNSEYICYHFSSRSTLLTFYPLSDAYHGKTINIHLPNASMNQRYTLTIQEVEQQLLVNVILKDGSFLTLQLPLSFLFSSANTLNGEWFHLQNPYDFTVRVPHFLFYVSPQFSVVFLEDGGLLGLKKVDGVHYEPLLFNDNSYLKSLTRFFSRSSKSDYDSVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMGTLLVLTYTFQNNIPTNLSASAIWSIVDLVLTRPLELNVEASYLNLIVLWKSGTASKLQILNVNDESFKNYEWIESVNKSLVDLQSEHDLDIVTKTGDVERGFCNLKSRYGTQIFERAQQILSENKIIMAHNEDEEYLANLETILRDVKTAFNEASSITLYGDEIILVNCFQPYNHSLYKLNTTVENWFYNMHSETDGSELFKYLRTLNGFASTLSNDVLRSISKKFLDIITGELPDSMTTVEKFTDIFKNCLENQFEITNLKILFDELNSFDIPVVLNDLINNQMKPGIFWKKDFISAIKFDGFTSIISLESLHQLLSIHYRITLQVLLTFVLFDLDTEIFGQHISTLLDLHYKQFLLLNLYRQDKCLLAEVLLKDSSEFSFGVKFFNYGQLIAYIDSLNSNVYNTENSFFMTFFRSSHKNIRFFLENVECEVQEFMFAMTLFSFDQSYEIFQLHDIWKDLLCTFTVPHSAFYYQLSLLFDQEFALKCISKSAEYSLQDFKEKQHIHYLNLLIHFEVLDVLRLGHECRTNFLQLLLQEDIDFFSTLLRLCNAHSDKIVDSILSQNLRSCFKKLYCFRMLNAAAEVLYQYILMIRKRKCYLMVINVLSVTLTDLRDELRG 1036
                                    11        21       |54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304||     319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709 ||    722   ||  738       755       765||     778  ||   813    || 825       839       849   ||  867       877 ||    891   ||  906      |919       929 ||    950    || 964      |978       994      1004   || 1030      
                                                      29|                                                                                                                                                                                                                                                         305|                                                                                                                                                                                                                                                                                                                                                                                                             711|        726|          746|         766|        781|        818|         833|            853|              879|        895|         913|           931|         955|        971|        987|          1008|           
                                                       53                                                                                                                                                                                                                                                          311                                                                                                                                                                                                                                                                                                                                                                                                              715         733           754          770         807         821          838             862               884         901          917            943          960         976         994           1025           


Chain F from PDB  Type:PROTEIN  Length:419
                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhh.........hhhhh..........hhhhhhhhhhhhhhh...hhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn F    7 YQTERFTKFSDTLKEFKIEQDPFNIIREFRSAAGQLALDLANSGDESNVISSKDWELEARFWHLVELLLVFRNADLDLDEmELHPYNSRGLFEKKLmQDNKQLYQIWIVmVWLKENTYVmERPKNVPTSKWLNSITSGGLKSCDLDFPLRENTNVLDVKDKEEDHIFFKYIYELILAGAIDEALEEAKLSDNISICmILCGIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQAGLDPYERAIYSYLSGAIPNQEVLQYSDWESDLHIHLNQILQTEIENYLLENNQVGTDELILPLPSHALTVQEVLNRVASRHPSESEHPIRVLmASVILDSLPSVIHSSVEmLLDIIDKPYLLRIVTHLAICLDIINPGSVEEVDKSKLITTYISLLKLQGLYENIPIYATFLNESDCL  442
                                    16        26|       43        53        63        73        83        93|      103      |113       123       133       143       153       163       173       183       193       203      |213       223       233       243       253       263       273       283       293       303       313       323       333       343   |   353       363 | ||  383       393       403       413       423       433         
                                              26|                                                          94-MSE         110-MSE      123-MSE   133-MSE                                                                      210-MSE                                                                                                                                  347-MSE           365-MSE                                                               
                                               34                                                                                                                                                                                                                                                                                                                                          367|                                                                
                                                                                                                                                                                                                                                                                                                                                                                            378                                                                


Chain H from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee..hhhh.eeeeeee.....eeeeeeee.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeee..ee...eeeee........eeeee..........eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh....eeeeeeehhhheeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn H   28 VQLVESGGGLVQPGGSLRLSCAASGFNFSSSSIHWVRQAPGKGLEWVASISSYYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARYMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC  253
                                    37        47        57        67        77        87        97       107       117       138       148       158       168       178       188       198       208       218       228       238       248     
                                                                                                                           125|                                                                                                                    
                                                                                                                            137                                                                                                                    


Chain L from PDB  Type:PROTEIN  Length:209
                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eee......eeeeeee........eeeee......eeeee...ee.......eeeeee..eeeeee........eeeeee.......eeee........eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..ee....eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4xmn L    4 DIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC  217
                                    13        23        33        43        53        63        73        83        93|      108       118       128       138       148       158       168       178       188       198       208         
                                                                                                                    93|                                                                                                                      
                                                                                                                     99
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XMN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XMN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XMN)

(-) Gene Ontology  (52, 118)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  4xmn
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  NU120_YEAST | P35729
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  NU145_YEAST | P49687
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  NUP84_YEAST | P52891
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  NUP85_YEAST | P46673
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  SEC13_YEAST | Q04491
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  3.4.21.-
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Access by UniProt ID/Accession number
  NU120_YEAST | P35729
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  NU145_YEAST | P49687
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  NUP84_YEAST | P52891
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  NUP85_YEAST | P46673
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SEC13_YEAST | Q04491
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NU120_YEAST | P35729: 3f7f 3h7n 3hxr 4xmm
        NU145_YEAST | P49687: 3bg0 3bg1 3iko 3jro 3jrp 3kep 3kes 4xmm
        NUP84_YEAST | P52891: 3iko 3jro 4xmm
        NUP85_YEAST | P46673: 3ewe 3f3f 3f3g 3f3p 4xmm
        SEC13_YEAST | Q04491: 2pm6 2pm7 2pm9 3iko 3jro 3jrp 3mzk 3mzl 4bzj 4bzk 4xmm

(-) Related Entries Specified in the PDB File

4xmm