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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM PSEUDOMONAS PUTIDA F1 (PPUT_1203), TARGET EFI-500184, WITH BOUND D-GLUCURONATE
 
Authors :  M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Benach, S. R. Wa J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)
Date :  26 Dec 14  (Deposition) - 28 Jan 15  (Release) - 07 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Benach, S. R. Wasserman, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Trap Periplasmic Solute Binding Protein From Pseudomonas Putida F1 (Pput_1203), Target Efi-500184, With Bound D-Glucuronate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRAP DICARBOXYLATE TRANSPORTER SUBUNIT DCTP
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YSA_07416
    Organism Scientific: PSEUDOMONAS PUTIDA ND6
    Organism Taxid: 231023

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric/Biological Unit (4, 18)
No.NameCountTypeFull Name
1BDP1Ligand/IonBETA-D-GLUCOPYRANURONIC ACID
2CXS1Ligand/Ion3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
3MSE14Mod. Amino AcidSELENOMETHIONINE
4SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:33 , GLU A:71 , ARG A:87 , SER A:89 , ARG A:149 , ARG A:169 , GLN A:171 , THR A:192 , ASN A:209 , ASN A:210 , THR A:213 , GLU A:236 , HOH A:656 , HOH A:666 , HOH A:676binding site for residue BDP A 401
2AC2SOFTWARELYS A:258 , ARG A:261 , LEU A:327 , TYR A:328 , PHE A:329 , SO4 A:403binding site for residue CXS A 402
3AC3SOFTWAREARG A:261 , CXS A:402 , HOH A:558binding site for residue SO4 A 403
4AC4SOFTWAREGLY A:147 , SER A:148 , PRO A:211 , TRP A:271 , SER A:275 , GLU A:279 , HOH A:703binding site for residue SO4 A 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4XFE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4XFE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XFE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XFE)

(-) Exons   (0, 0)

(no "Exon" information available for 4XFE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhh....eee.hhhhh...hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....eeeee.....hhhhhh..eeee..hhhhhhhhhhh..eeee.hhhhhhhhhhh....eeeehhhhhhhhhhhhh..eeeeeeee...eeeeeehhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xfe A  25 LDIKFAEIHPAGYPTVVAEQNmGKKLEQASNGDITFKmFAGGVLGSEKEVIEQAQIGAVQmTRVSLGIVGPVVPDVNVFNmPFVFRDHDHmRKIIDGEIGQEILDKITNSDFNLVALAWmDGGSRSIYTKKPVRSLEDLKGmKIRVQGNPLFIDmmNAmGGNGIAmDTGEIFSALQTGVIDGAENNPPTLLEHNHFQSAKYYTLTGHLILPEPVVmSKTTWNKLTPEQQVLVKKVAREAQmEERALWDAKSAASEEKLKAAGVEFITVDKKPFYDATASVREKYGAQYADLmKRIDAVQAENLYFQ 330
                                    34        44 |      54       |64        74        84|       94       104|      114|      124       134       144       154       164 |     174    || 184     | 194       204       214       224       234     | 244       254       264|      274       284       294       304       314 |     324      
                                                46-MSE          62-MSE                 85-MSE             105-MSE   115-MSE                      144-MSE               166-MSE      179-MSE      |                                               240-MSE                  265-MSE                                            316-MSE          
                                                                                                                                                                                     180-MSE     |                                                                                                                                            
                                                                                                                                                                                        183-MSE  |                                                                                                                                            
                                                                                                                                                                                               190-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XFE)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 2)

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(-) Related Entries Specified in the PDB File

4xeq 4xf5