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(-) Description

Title :  SOLUBLE RABBIT NEPRILYSIN
 
Authors :  S. L. Labiuk, P. Grochulski, J. Sygusch
Date :  16 Dec 14  (Deposition) - 25 May 16  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Neutral Endopeptidase, Proteinase, Zn-Dependent, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Labiuk, J. Sygusch, P. Grochulski
Structures Of Soluble Rabbit Neutral Endopeptidase (Neprilysin) Complexed With Phosphoramidon And Thiorphan
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NEPRILYSIN
    Chains: A, B
    EC Number: 3.4.24.11
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Strain: GS115
    Expression System Taxid: 4922
    Expression System Variant: HIS4-
    Gene: MME
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Synonym: ATRIOPEPTIDASE,ENKEPHALINASE,NEUTRAL ENDOPEPTIDASE 24.11, NEUTRAL ENDOPEPTIDASE,SKIN FIBROBLAST ELASTASE,SFE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO42Ligand/IonPHOSPHATE ION
3ZN2Ligand/IonZINC ION
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO41Ligand/IonPHOSPHATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO41Ligand/IonPHOSPHATE ION
3ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 13)
No.NameCountTypeFull Name
1NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
2PO42Ligand/IonPHOSPHATE ION
3ZN-1Ligand/IonZINC ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:584 , HIS A:588 , GLU A:647 , PO4 A:802binding site for residue ZN A 801
02AC2SOFTWAREASN A:543 , ALA A:544 , HIS A:584 , GLU A:585 , HIS A:588 , GLU A:647 , HIS A:712 , ZN A:801 , HOH A:1199 , HOH A:1264binding site for residue PO4 A 802
03AC3SOFTWAREHIS B:584 , HIS B:588 , GLU B:647 , PO4 B:802binding site for residue ZN B 801
04AC4SOFTWAREASN B:543 , ALA B:544 , HIS B:584 , GLU B:585 , HIS B:588 , GLU B:647 , HIS B:712 , ZN B:801 , HOH B:953 , HOH B:1051binding site for residue PO4 B 802
05AC5SOFTWAREASN A:145 , ALA A:148 , HOH A:1408binding site for Mono-Saccharide NAG A 803 bound to ASN A 145
06AC6SOFTWAREASN A:285 , HOH A:960 , HOH A:1239 , HOH A:1357binding site for Poly-Saccharide residues NAG A 804 through NAG A 805 bound to ASN A 285
07AC7SOFTWAREMET A:303 , ASN A:311 , HOH A:910 , HOH A:937 , HOH A:1426 , GLN B:609binding site for Poly-Saccharide residues NAG A 806 through NAG A 807 bound to ASN A 311
08AC8SOFTWAREASN A:325 , ASN A:328 , GLU A:329 , HOH A:970 , HOH A:1391binding site for Mono-Saccharide NAG A 808 bound to ASN A 325
09AC9SOFTWARELYS A:319 , ASN B:145 , ALA B:148 , HOH B:976 , HOH B:1024 , HOH B:1092binding site for Poly-Saccharide residues NAG B 803 through NAG B 804 bound to ASN B 145
10AD1SOFTWAREASN B:285 , HOH B:905 , HOH B:1109 , HOH B:1284binding site for Mono-Saccharide NAG B 805 bound to ASN B 285
11AD2SOFTWARELYS B:186 , ASN B:325 , GLU B:329 , LYS B:667binding site for Poly-Saccharide residues NAG B 806 through NAG B 807 bound to ASN B 325

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:57 -A:62
2A:80 -A:735
3A:88 -A:695
4A:143 -A:411
5A:234 -A:242
6A:621 -A:747
7B:57 -B:62
8B:80 -B:735
9B:88 -B:695
10B:143 -B:411
11B:234 -B:242
12B:621 -B:747

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Pro A:562 -Pro A:563
2Pro B:562 -Pro B:563

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XBH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XBH)

(-) Exons   (0, 0)

(no "Exon" information available for 4XBH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:696
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh.hhhhh.hhhhhh....hhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.eeehhhhhhhh..ee..ee.hhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhheeeee..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh................eee....eeeee.hhh.........hhhhhhhhhhhhhhhhhhhh...hhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.eeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xbh A  55 GICKSSDCIKSAARLIQNMDATAEPCTDFFKYACGGWLKRNVIPETSSRYSNFDILRDELEVILKDVLQEPKTEDIVAVQKAKTLYRSCVNETAIDSRGGQPLLKLLPDVYGWPVATQNWEQTYGTSWSAEKSIAQLNSKYGKKVLINFFVGTDDKNSMNHIIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMIAVAKLIRQEEGLPIDENQISVEMNKVMELEKEIANATTKSEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWSNFTNEIMSTVNINIPNEEDVVVYAPEYLIKLKPILTKYSPRDLQNLMSWRFIMDLVSSLSRTYKDSRNAFRKALYGTTSESATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKKAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWITGAAIVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSANNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGIGQAYRAYQNYVKKNGEEKLLPGIDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGSLQNSVEFSEAFQCPKNSYMNPEKKCRVW 750
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744      


Chain B from PDB  Type:PROTEIN  Length:696
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......eeehhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhh.hhhhhh....hhhhhhhhhhhhhh.....eeeeeee..eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.eeehhhhhhhh..ee..ee.hhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhheeeee..hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh....................eee....eeeee.hhh.........hhhhhhhhhhhhhhhhhhhhhh.hhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.eeehhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4xbh B  55 GICKSSDCIKSAARLIQNMDATAEPCTDFFKYACGGWLKRNVIPETSSRYSNFDILRDELEVILKDVLQEPKTEDIVAVQKAKTLYRSCVNETAIDSRGGQPLLKLLPDVYGWPVATQNWEQTYGTSWSAEKSIAQLNSKYGKKVLINFFVGTDDKNSMNHIIHIDQPRLGLPSRDYYECTGIYKEACTAYVDFMIAVAKLIRQEEGLPIDENQISVEMNKVMELEKEIANATTKSEDRNDPMLLYNKMTLAQIQNNFSLEINGKPFSWSNFTNEIMSTVNINIPNEEDVVVYAPEYLIKLKPILTKYSPRDLQNLMSWRFIMDLVSSLSRTYKDSRNAFRKALYGTTSESATWRRCANYVNGNMENAVGRLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWMDAETKKKAEEKALAIKERIGYPDDIVSNDNKLNNEYLELNYKEDEYFENIIQNLKFSQSKQLKKLREKVDKDEWITGAAIVNAFYSSGRNQIVFPAGILQPPFFSAQQSNSLNYGGIGMVIGHEITHGFDDNGRNFNKDGDLVDWWTQQSANNFKEQSQCMVYQYGNFSWDLAGGQHLNGINTLGENIADNGGIGQAYRAYQNYVKKNGEEKLLPGIDLNHKQLFFLNFAQVWCGTYRPEYAVNSIKTDVHSPGNFRIIGSLQNSVEFSEAFQCPKNSYMNPEKKCRVW 750
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XBH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XBH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XBH)

(-) Gene Ontology  (27, 27)

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  4xbh
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        NEP_RABIT | P08049: 4zr5

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