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(-) Description

Title :  CRYSTAL STRUCTURE OF THE OLFACTOMEDIN DOMAIN FROM NOELIN/PANCORTIN/OLFACTOMEDIN-1
 
Authors :  S. E. Hill, E. Nguyen, R. L. Lieberman
Date :  15 Dec 14  (Deposition) - 15 Jul 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Propeller, 5 Bladed Propeller, Olfactomedin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. E. Hill, R. K. Donegan, E. Nguyen, T. M. Desai, R. L. Lieberman
Molecular Details Of Olfactomedin Domains Provide Pathway T Structure-Function Studies.
Plos One V. 10 30888 2015
PubMed-ID: 26121352  |  Reference-DOI: 10.1371/JOURNAL.PONE.0130888

(-) Compounds

Molecule 1 - NOELIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 200-467
    Gene: OLFM1, NOE1, NOEL1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NEURONAL OLFACTOMEDIN-RELATED ER LOCALIZED PROTEIN, OLFACTOMEDIN-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3NA1Ligand/IonSODIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:356 , MET A:358 , GLU A:404 , ALA A:405 , LEU A:452 , ASP A:453 , HOH A:667binding site for residue CA A 501
2AC2SOFTWAREILE A:233 , HIS A:269 , HIS A:352 , PRO A:441 , GLN A:443binding site for residue GOL A 502
3AC3SOFTWAREPRO A:295 , ASP A:458 , LEU A:471 , ASN A:473 , HOH A:614binding site for residue GOL A 503
4AC4SOFTWAREGLY A:302 , GLN A:303 , ASP A:356 , LEU A:357 , ASP A:453 , HOH A:646binding site for residue NA A 504

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:227 -A:409

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:257 -Gly A:258
2Gly A:420 -Gly A:421

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4XAT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4XAT)

(-) Exons   (0, 0)

(no "Exon" information available for 4XAT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...eeeee.....eeeee..........eeeee..eeeeeeeee.hhhhhhhh...eeeeeeeeee....eee..eeeee.....eeeeee.....eeeeee....................eeeee..eeeeeee......eeeeeee......eeeeeeeeee.hhh..eeee..eeeee.......eeeeeee....eeeeeeee.......eeeeeee....eeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4xat A 225 LACGKLTGISDPVTVKTSGSRFGSWMTDPLAPEGDNRVWYMDGYHNNRFVREYKSMVDFMNTDNFTSHRLPHPWSGTGQVVYNGSIYFNKFQSHIIIRFDLKTETILKTRSLDYAGYNNMYHYAWGGHSDIDLMVDESGLWAVYATNQNAGNIVVSRLDPVSLQTLQTWNTSYPKRSAGEAFIICGTLYVTNGYSGGTKVHYAYQTNASTYEYIDIPFQNKYSHISMLDYNPKDRALYAWNNGHQILYNVTLFHVI 480
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4XAT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4XAT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4XAT)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Gly A:420 - Gly A:421   [ RasMol ]  
 

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  4xat
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4xav