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(-) Description

Title :  STRUCTURAL BASIS FOR MUTATION-INDUCED DESTABILIZATION OF PROFILIN 1 IN ALS
 
Authors :  T. V. Silvas, S. M. D. Shandilya, C. A. Schiffer
Date :  25 Nov 14  (Deposition) - 10 Jun 15  (Release) - 17 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.23
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Human Profilin-1 M114T Mutant Als, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. V. Silvas, S. M. D. Shandilya, C. A. Schiffer
Als-Causing Mutations Destabilize The Native Conformation O Profilin-1
Proc. Natl. Acad. Sci. Usa 2015
PubMed: search  |  Reference-DOI: 10.1073/PNAS.1424108112

(-) Compounds

Molecule 1 - PROFILIN-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: PLYSS
    Expression System Vector Type: PLASMID
    Gene: PFN1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EPIDIDYMIS TISSUE PROTEIN LI 184A,PROFILIN I

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4X25)

(-) Sites  (0, 0)

(no "Site" information available for 4X25)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4X25)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4X25)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4X25)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4X25)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh....eeeeeeee.....eeeee....hhhhhhhhhhhhhh....hhhhhh.eee..eeeeeeeee.......eeeeee....eeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x25 A   2 AGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTFNVTVTKTDKTLVLLTGKEGVHGGLINKKCYEMASHLRRSQY 140
                                    11        21        31        41        51        61        71        81        91||     106       116       126       136    
                                                                                                                     92|                                          
                                                                                                                      98                                          


Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh...eeeeeeee.....eeeee....hhhhhhhhhhhhhh....hhhhhhheee..eeeeeeee........eeeee...eeeeee...eeeeeee....hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4x25 B   2 AGWNAYIDNLMDGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTTFNVTVTKTDKTLVLLTGKEGVHGGLINKKCYEMASHLRRSQY 140
                                    11||      22        32        42        52        62        72        82       |99       109       119       129       139 
                                     12|                                                                          90|                                          
                                      14                                                                           98
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4X25)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4X25)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4X25)

(-) Gene Ontology  (38, 38)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PROF1_HUMAN | P07737: 1awi 1cf0 1cjf 1fik 1fil 1pfl 2pav 2pbd 3chw 4x1l 4x1m

(-) Related Entries Specified in the PDB File

4x1l 4x1m