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(-) Description

Title :  CRYSTAL STRUCTURE OF BAG6-UBL4A DIMERIZATION DOMAIN
 
Authors :  J. Y. Mock, J. W. Chartron, W. M. Clemons Jr.
Date :  12 Nov 14  (Deposition) - 24 Dec 14  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  G,H  (1x)
Biol. Unit 3:  C,D  (1x)
Biol. Unit 4:  E,F  (1x)
Keywords :  Endoplasmic Reticulum, Recombinant Proteins, Human (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Y. Mock, J. W. Chartron, M. Zaslaver, Y. Xu, Y. Ye, W. M. Clemons
Bag6 Complex Contains A Minimal Tail-Anchor-Targeting Modul And A Mock Bag Domain.
Proc. Natl. Acad. Sci. Usa V. 112 106 2015
PubMed-ID: 25535373  |  Reference-DOI: 10.1073/PNAS.1402745112

(-) Compounds

Molecule 1 - UBIQUITIN-LIKE PROTEIN 4A
    ChainsB, H, D, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET33B
    Expression System Taxid562
    GeneUBL4A, DXS254E, GDX, UBL4
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymUBIQUITIN-LIKE PROTEIN GDX
 
Molecule 2 - LARGE PROLINE-RICH PROTEIN BAG6
    ChainsA, G, C, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET33B
    Expression System Taxid562
    GeneBAG6, BAT3, G3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymBAG FAMILY MOLECULAR CHAPERONE REGULATOR 6,BCL2-ASSOCIATED ATHANOGENE 6,BAG6,HLA-B-ASSOCIATED TRANSCRIPT 3,PROTEIN G3,PROTEIN SCYTHE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)      GH
Biological Unit 3 (1x)  CD    
Biological Unit 4 (1x)    EF  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WWR)

(-) Sites  (0, 0)

(no "Site" information available for 4WWR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WWR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WWR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WWR)

(-) Exons   (0, 0)

(no "Exon" information available for 4WWR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:53
                                                                                      
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                4wwr A 1053 MQLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQ 1105
                                  1062      1072      1082      1092      1102   

Chain B from PDB  Type:PROTEIN  Length:46
                                                                               
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                4wwr B   93 PQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERL  138
                                   102       112       122       132      

Chain C from PDB  Type:PROTEIN  Length:53
                                                                                      
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                4wwr C 1053 MQLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQ 1105
                                  1062      1072      1082      1092      1102   

Chain D from PDB  Type:PROTEIN  Length:46
                                                                               
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                4wwr D   94 QVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERLA  139
                                   103       113       123       133      

Chain E from PDB  Type:PROTEIN  Length:52
                                                                                     
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                4wwr E 1053 MQLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRL 1104
                                  1062      1072      1082      1092      1102  

Chain F from PDB  Type:PROTEIN  Length:46
                                                                               
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                4wwr F   93 PQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERL  138
                                   102       112       122       132      

Chain G from PDB  Type:PROTEIN  Length:52
                                                                                     
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                4wwr G 1054 QLLLSEAVSRAAKAAGARPLTSPESLSRDLEAPEVQESYRQQLRSDIQKRLQ 1105
                                  1063      1073      1083      1093      1103  

Chain H from PDB  Type:PROTEIN  Length:45
                                                                              
               SCOP domains --------------------------------------------- SCOP domains
               CATH domains --------------------------------------------- CATH domains
               Pfam domains --------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------- PROSITE
                 Transcript --------------------------------------------- Transcript
                4wwr H   94 QVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERL  138
                                   103       113       123       133     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WWR)

(-) Gene Ontology  (42, 50)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BAG6_HUMAN | P463791wx9 2n9p 4dwf 4eew 4x86
        UBL4A_HUMAN | P114412dzi 4x86

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4WWR)