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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE ISOZYME XII WITH 4-PROPYLTHIOBENZENESULFONAMIDE
 
Authors :  A. Smirnov, E. Manakova, S. Grazulis
Date :  10 Nov 14  (Deposition) - 01 Jul 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Drug Design, Carbonic Anhydrase, Benzenesulfonamide, Metal-Binding, Lyase-Lyase Inhibitor Comple, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Zubriene, J. Smirnoviene, A. Smirnov, V. Morkunaite, V. Michailoviene, J. Jachno, V. Juozapaitiene, P. Norvaisas, E. Manakova, S. Grazulis, D. Matulis
Intrinsic Thermodynamics Of 4-Substituted-2, 3, 5, 6-Tetrafluorobenzenesulfonamide Binding To Carbonic Anhydrases By Isothermal Titration Calorimetry.
Biophys. Chem. V. 205 51 2015
PubMed-ID: 26079542  |  Reference-DOI: 10.1016/J.BPC.2015.05.009

(-) Compounds

Molecule 1 - CARBONIC ANHYDRASE 12
    Chains: A, B, C, D
    EC Number: 4.2.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET21A
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 30-291
    Gene: CA12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CARBONATE DEHYDRATASE XII,CARBONIC ANHYDRASE XII,CA-XII, TUMOR ANTIGEN HOM-RCC-3.1.3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 21)

Asymmetric Unit (3, 21)
No.NameCountTypeFull Name
1EDO13Ligand/Ion1,2-ETHANEDIOL
2VD94Ligand/Ion4-(PROPYLSULFANYL)BENZENESULFONAMIDE
3ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 11)
No.NameCountTypeFull Name
1EDO9Ligand/Ion1,2-ETHANEDIOL
2VD92Ligand/Ion4-(PROPYLSULFANYL)BENZENESULFONAMIDE
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2VD92Ligand/Ion4-(PROPYLSULFANYL)BENZENESULFONAMIDE
3ZN-1Ligand/IonZINC ION

(-) Sites  (21, 21)

Asymmetric Unit (21, 21)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:91 , HIS A:93 , HIS A:117 , VD9 A:305binding site for residue ZN A 301
02AC2SOFTWAREASN A:64 , GLN A:89 , HIS A:91 , HOH A:547 , HOH A:583 , HOH A:600binding site for residue EDO A 302
03AC3SOFTWAREASP A:156 , SER A:160 , HOH A:556binding site for residue EDO A 303
04AC4SOFTWAREASN A:71 , LEU A:72 , THR A:88 , HOH A:486 , HOH A:509binding site for residue EDO A 304
05AC5SOFTWAREHIS A:91 , HIS A:93 , HIS A:117 , VAL A:119 , LEU A:197 , THR A:198 , THR A:199 , TRP A:208 , ZN A:301binding site for residue VD9 A 305
06AC6SOFTWAREHIS B:91 , HIS B:93 , HIS B:117 , VD9 B:308binding site for residue ZN B 301
07AC7SOFTWAREASN B:64 , GLN B:89 , HIS B:91 , EDO B:305 , HOH B:501 , HOH B:576binding site for residue EDO B 302
08AC8SOFTWARESER B:42 , THR B:44 , LEU B:46 , GLY B:80 , TYR B:190 , ARG B:192binding site for residue EDO B 303
09AC9SOFTWAREASP B:156 , SER B:160 , GLN B:221 , ALA B:224 , HOH B:657binding site for residue EDO B 304
10AD1SOFTWAREASN B:64 , LYS B:69 , GLN B:89 , EDO B:302 , VD9 B:308 , HOH B:404binding site for residue EDO B 305
11AD2SOFTWARELEU B:183 , VAL B:215 , HOH B:493 , HOH B:508 , HOH B:622binding site for residue EDO B 306
12AD3SOFTWARELEU B:256 , TYR B:258 , HOH B:522 , HOH B:595binding site for residue EDO B 307
13AD4SOFTWAREHIS B:91 , HIS B:93 , HIS B:117 , LEU B:197 , THR B:198 , THR B:199 , TRP B:208 , ZN B:301 , EDO B:305binding site for residue VD9 B 308
14AD5SOFTWAREHIS C:91 , HIS C:93 , HIS C:117 , VD9 C:304binding site for residue ZN C 301
15AD6SOFTWAREASN C:64 , GLN C:89 , HIS C:91 , HOH C:562binding site for residue EDO C 302
16AD7SOFTWAREASN C:71 , LEU C:72 , THR C:88 , HOH C:489 , HOH C:512 , HOH C:518binding site for residue EDO C 303
17AD8SOFTWAREHIS C:91 , HIS C:93 , HIS C:117 , VAL C:119 , LEU C:197 , THR C:198 , THR C:199 , TRP C:208 , ZN C:301binding site for residue VD9 C 304
18AD9SOFTWAREHIS D:91 , HIS D:93 , HIS D:117 , VD9 D:304binding site for residue ZN D 301
19AE1SOFTWAREASN D:64 , HIS D:66 , GLN D:89 , HIS D:91 , VD9 D:304 , HOH D:478 , HOH D:612 , HOH D:637binding site for residue EDO D 302
20AE2SOFTWARESER D:42 , THR D:44 , LEU D:46 , GLY D:80 , TYR D:190 , ARG D:192binding site for residue EDO D 303
21AE3SOFTWAREHIS D:91 , HIS D:93 , HIS D:117 , ALA D:129 , LEU D:197 , THR D:198 , THR D:199 , TRP D:208 , ZN D:301 , EDO D:302binding site for residue VD9 D 304

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:22 -A:202
2B:22 -B:202
3C:22 -C:202
4D:22 -D:202

(-) Cis Peptide Bonds  (8, 9)

Asymmetric Unit
No.Residues
1Ser A:28 -Pro A:29
2Pro A:200 -Pro A:201
3Ser B:28 -Pro B:29
4Pro B:200 -Pro B:201
5Ser C:28 -Pro C:29
6Pro C:200 -Pro C:201
7Ser D:28 -Pro D:29
8Pro D:200 -Pro D:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WW8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WW8)

(-) Exons   (0, 0)

(no "Exon" information available for 4WW8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhh...hhhhhh......eehhh.eee.......eee........eeeeee....eeee.....eee.....eeeeeeeeee...........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee...hhhhhhhhhhhhhhh....eeeee..hhhhhh......eeeeee..........eeeeee...eeehhhhhhhhhhh............................eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww8 A   3 KWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTSFSQ 263
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 


Chain B from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eehhh.eee.......eee........eeeeee....eeee.....eee.....eeeeeeeeee...........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee...hhhhhhhhhhhhhh.....eeeee..hhhhhh......eeeeee..........eeeeee...eeehhhhhhhhhhhh...........................eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww8 B   3 KWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTSFSQ 263
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 


Chain C from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..hhhhhhhhhhh......eehhh.eee.......eee........eeeeee....eeee.....eee.....eeeeeeeeee...........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee......hhhhhhhhhhh.....eeeee..hhhhhh......eeeeee..........eeeeee...eeehhhhhhhhhhh............................eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww8 C   3 KWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTSFSQ 263
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262 


Chain D from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eehhh.eee.......eee........eeeeee....eeee.....eee.....eeeeeeeeee...........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee.....hhhhhhhhhhhh.....eeeee..hhhhhh......eeeeee..........eeeeee...eeehhhhhhhhhhhh...........................eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ww8 D   3 KWTYFGPDGENSWSKKYPSCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVHYNSDLYPDASTASNKSEGLAVLAVLIEMGSFNPSYDKIFSHLQHVKYKGQEAFVPGFNIEELLPERTAEYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQVQKFDERLVYTSFS 262
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WW8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WW8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WW8)

(-) Gene Ontology  (10, 10)

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  4.2.1.1
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 Related Entries

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        CAH12_HUMAN | O43570: 1jcz 1jd0 4ht2 4kp5 4kp8 4q0l 4qj0 4qjo 4qjw

(-) Related Entries Specified in the PDB File

4wr7 4wup 4wuq 4ww6