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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DAP12 TRANSMEMBRANE DOMAIN IN LIPIDIC CUBIC PHASE
 
Authors :  M. J. Call, M. E. Call, K. Knoblich
Date :  16 Oct 14  (Deposition) - 03 Jun 15  (Release) - 10 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.77
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Alpha-Helix Transmembrane Signalling, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Knoblich, S. Park, M. Lutfi, L. Van 'T Hag, C. E. Conn, S. A. Seabrook, J. Newman, P. E. Czabotar, W. Im, M. E. Call, M. J. Call
Transmembrane Complexes Of Dap12 Crystallized In Lipid Membranes Provide Insights Into Control Of Oligomerization In Immunoreceptor Assembly.
Cell Rep V. 11 1184 2015
PubMed-ID: 25981043  |  Reference-DOI: 10.1016/J.CELREP.2015.04.045

(-) Compounds

Molecule 1 - TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 35-67
    Gene: TYROBP, DAP12, KARAP
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNAX-ACTIVATION PROTEIN 12,KILLER-ACTIVATING RECEPTOR- ASSOCIATED PROTEIN,KAR-ASSOCIATED PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1K1Ligand/IonPOTASSIUM ION
2OLC4Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:23 , THR A:27 , ASP B:23 , THR B:27 , ASP C:23 , THR C:27binding site for residue K A 101
2AC2SOFTWAREGLY A:22 , ASP A:23 , VAL A:34 , GLY A:38 , PRO B:13 , LEU B:16 , ALA B:17 , ASP B:23 , LEU B:29 , ARG B:39 , OLC C:101 , HOH C:201binding site for residue OLC B 101
3AC3SOFTWAREVAL A:11 , LEU A:16 , GLY A:18 , LEU A:37 , ILE B:19 , ASP B:23 , LEU B:26 , OLC B:101 , ASP C:23 , HOH C:201 , HOH C:204binding site for residue OLC C 101
4AC4SOFTWAREVAL A:20 , VAL A:25 , ALA B:33 , VAL C:25 , VAL C:28 , LEU C:29 , PHE C:36 , ARG C:39 , OLC C:103 , HOH C:211binding site for residue OLC C 102
5AC5SOFTWARELEU B:37 , GLY B:38 , HOH B:201 , GLY C:14 , VAL C:15 , GLY C:18 , GLY C:22 , LEU C:26 , OLC C:102 , HOH C:202 , HOH C:205binding site for residue OLC C 103

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:8 -B:8

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WOL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WOL)

(-) Exons   (0, 0)

(no "Exon" information available for 4WOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:33
                                                                
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                  4wol A  8 CSTVSPGVLAGIVVGDLVLTVLIALAVYFLGRL 40
                                    17        27        37   


Chain B from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  4wol B  8 CVSPGVLAGIVVGDLVLTVLIALAVYFLGRL 40
                            ||      19        29        39 
                            8|                             
                            11                             


Chain C from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4wol C 11 VSPGVLAGIVVGDLVLTVLIALAVYFLGRL 40
                                    20        30        40
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WOL)

(-) Gene Ontology  (19, 19)

Asymmetric/Biological Unit(hide GO term definitions)

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  4wol
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  TYOBP_HUMAN | O43914
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYOBP_HUMAN | O43914: 2l34 2l35 4wo1

(-) Related Entries Specified in the PDB File

2l34 2L34 WAS SOLVED BY NMR
2l35 2L35 WAS SOLVED BY NMR
4wo1 4WO1 IS TETRAMERIC FORM