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(-) Description

Title :  CRYSTAL STRUCTURE OF THE OXIDIZED TPR DOMAIN OF LGN IN COMPLEX WITH FRMPD4/PRESO1 AT 2.9 ANGSTROM RESOLUTION
 
Authors :  H. Takayanagi, S. Yuzawa, H. Sumimoto
Date :  11 Oct 14  (Deposition) - 16 Sep 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tetratricopeptide Repeat, Tpr, Cell Polarity, Cytoplasm And Cell Cortex, Signaling Protein-Protein Binding Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Takayanagi, S. Yuzawa, H. Sumimoto
Structural Basis For The Recognition Of The Scaffold Protei Frmpd4/Preso1 By The Tpr Domain Of The Adaptor Protein Lgn
Acta Crystallogr. , Sect. F V. 71 175 2015
PubMed-ID: 25664792  |  Reference-DOI: 10.1107/S2053230X14028143

(-) Compounds

Molecule 1 - G-PROTEIN-SIGNALING MODULATOR 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PRSFDUET-1
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL TPR DOMAIN, UNP RESIDUES 20-421
    Gene: GPSM2, LGN
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MOSAIC PROTEIN LGN
 
Molecule 2 - FERM AND PDZ DOMAIN-CONTAINING PROTEIN 4
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-6P-2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: FRMPD4-L, UNP RESIDUES 978-1025
    Gene: FRMPD4, KIAA0316, PDZD10, PDZK10
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PDZ DOMAIN-CONTAINING PROTEIN 10,PSD-95-INTERACTING REGULATOR OF SPINE MORPHOGENESIS,PRESO

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4WNF)

(-) Sites  (0, 0)

(no "Site" information available for 4WNF)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:28 -A:33

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WNF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WNF)

(-) Exons   (0, 0)

(no "Exon" information available for 4WNF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                                
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4wnf A   12 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  267
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151   ||  162       172       182       192       202       212       222       232       242       252       262     
                                                                                                                                                                         155|                                                                                                              
                                                                                                                                                                          157                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:18
                                                   
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ............hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                4wnf B  994 HMEMEPETMETKSVTDYF 1011
                                  1003
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WNF)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (23, 25)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRPD4_HUMAN | Q14CM0: 4wnd 4wne 4wng
        GPSM2_HUMAN | P81274: 3sf4 4wnd 4wne 4wng 5a6c

(-) Related Entries Specified in the PDB File

3sf4 3SF4 CONTAINS THE SAME PROTEIN COMPLEXED WITH MINSC.
4wnd
4wne
4wng