4WL5 - JenaLib

Title :   STRUCTURE OF D456A MUTANT OF THE NICKING ENDONUCLEASE NT.BSPD6I.

Authors :   G. S. Kachalova, A. N. Popov, A. K. Yunusova, R. I. Artyukh, T. A. Perevya L. A. Zheleznaya, H. D. Bartunik

Date :   06 Oct 14 (Deposition) - 23 Dec 15 (Release) - 23 Dec 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.15

Chains :   Asym./Biol. Unit : A

Keywords :   Nicking Endonuclease, Restriction Enzyme Hydrolase Activity'S Mutant, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. S. Kachalova, A. N. Popov, A. K. Yunusova, R. I. Artyukh, T. A. Perevyazova, L. A. Zheleznaya, H. D. Bartunik
Structure Of D456A Mutant Of The Nicking Endonuclease Nt. Bspd6I.
To Be Published
PubMed: search

Compounds

Molecule 1 - HETERODIMERIC RESTRICTION ENDONUCLEASE R.BSPD6I LARGE SUBUNIT
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BSPD6R1
	Mutation	:	YES
	Organism Scientific	:	BACILLUS SP. D6
	Organism Taxid	:	127889

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:2	-	Lys A:3
2	Ser A:12	-	Pro A:13
3	Gly A:39	-	Tyr A:40
4	Tyr A:40	-	Lys A:41
5	Tyr A:61	-	Lys A:62
6	Lys A:62	-	Lys A:63
7	Glu A:64	-	Ala A:65
8	Tyr A:118	-	Pro A:119
9	Leu A:296	-	Pro A:297
10	Phe A:479	-	Lys A:480

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:594
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhh............hhhhhhhhhhh.................hhhhhhhhhhh..eee.....eeehhhhhhhhh..hhhhhhhhhhhhh...................hhhhhhhhhhhhhheehhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh....eeee..eeee...hhhhhhhhhhhh.......hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...eeee..ee.....eee........eeee...eeeeeee............hhhhhhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wl5 A   1 MAKKVNWYVSCSPRSPEKIQPELKVLANFEGSYWKGVKGYKAQEAFAKELAALPQFLGTTYKKEAAFSTRDRVAPMKTYGFVFVDEEGYLRITEAGKMLANNRRPKDVFLKQLVKWQYPSFQHKGKEYPEEEWSINPLVFVLSLLKKVGGLSKLDIAMFCLTATNNNQVDEIAEEIMQFRNEREKIKGQNKKLEFTENYFFKRFEKIYGNVSHKSKIETKMRNARDVADATTRYFRYTGLFVARGNQLVLNPEKSDLIDEIISSSKVVKNYTRVEEFHEYYGNPSLPQFSFETKEQLLDLAHRIRDENTRLAEQLVEHFPNVKVEIQVLEDIYNSLNKKVDVETLKDVIYHAKELQLELKKKKLQADFNDPRQLEEVIDLLEVYHEKKNVIEEKIKARFIANKNTVFEWLTWNGFIILGNALEYKNNFVIDEELQPVTHAAGNQPAMEIIYEDFIVLGEVTTSKGATQFKMESEPVTRHYLNKKKELEKQGVEKELYCLFIAPEINKNTFEEFMKYNIVQNTRIIPLSLKQFNMLLMVQKKLIEKGRRLSSYDIKNLMVSLYRTTIECERKYTQIKAGLEETLNNWVVDKEVRF 604
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210||     230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600    
                                                                                                                                                                                                                                            211|                                                                                                                                                                                                                                                                                                                                                                                              
                                                                                                                                                                                                                                             222

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Sites
(no "Sites" information available for 4wl5)

	Cis Peptide Bonds
		Ala A:2 - Lys A:3	[ RasMol ]
		Glu A:64 - Ala A:65	[ RasMol ]
		Gly A:39 - Tyr A:40	[ RasMol ]
		Leu A:296 - Pro A:297	[ RasMol ]
		Lys A:62 - Lys A:63	[ RasMol ]
		Phe A:479 - Lys A:480	[ RasMol ]
		Ser A:12 - Pro A:13	[ RasMol ]
		Tyr A:118 - Pro A:119	[ RasMol ]
		Tyr A:40 - Lys A:41	[ RasMol ]
		Tyr A:61 - Lys A:62	[ RasMol ]

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