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(-) Description

Title :  CRYSTAL STRUCTURE OF TRNA-DIHYDROURIDINE(20) SYNTHASE CATALYTIC DOMAIN
 
Authors :  C. Bou Nader, L. Pecqueur, A. Kamah, D. Bregeon, B. Golinelli-Pimpane B. G. Guimaraes, M. Fontecave, D. Hamdane
Date :  17 Sep 14  (Deposition) - 07 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.68
Chains :  Asym./Biol. Unit :  A
Keywords :  Rna Binding Protein, Trna Processing, Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Bou-Nader, L. Pecqueur, D. Bregeon, A. Kamah, V. Guerineau, B. Golinelli-Pimpaneau, B. G. Guimaraes, M. Fontecave, D. Hamdane
An Extended Dsrbd Is Required For Post-Transcriptional Modification In Human Trnas.
Nucleic Acids Res. V. 43 9446 2015
PubMed-ID: 26429968  |  Reference-DOI: 10.1093/NAR/GKV989

(-) Compounds

Molecule 1 - TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE
    Chains: A
    EC Number: 1.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11D
    Expression System Taxid: 469008
    Expression System Variant: STAR CODON PLUS
    Expression System Vector Type: PLASMID
    Fragment: DUS DOMAIN, UNP RESIDUES 14-333
    Gene: DUS2, DUS2L
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DIHYDROURIDINE SYNTHASE 2,UP-REGULATED IN LUNG CANCER PROTEIN 8,URLC8,TRNA-DIHYDROURIDINE SYNTHASE 2-LIKE,HDUS2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE
3SO44Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:17 , PRO A:18 , MET A:19 , VAL A:20 , GLU A:43 , GLN A:87 , ASN A:113 , LYS A:155 , HIS A:183 , ASN A:214 , GLY A:215 , GLY A:216 , SER A:217 , MET A:240 , ALA A:242 , ARG A:243 , SO4 A:403 , HOH A:502 , HOH A:524binding site for residue FMN A 401
2AC2SOFTWARESER A:91 , ARG A:95 , GLY A:315 , LEU A:316 , GLY A:317 , ALA A:318binding site for residue SO4 A 402
3AC3SOFTWAREGLY A:115 , LYS A:155 , ARG A:157 , HIS A:183 , FMN A:401binding site for residue SO4 A 403
4AC4SOFTWAREARG A:21 , THR A:279 , ASN A:280 , HOH A:527binding site for residue SO4 A 404
5AC5SOFTWAREASN A:82 , ARG A:83 , HOH A:520binding site for residue SO4 A 405
6AC6SOFTWAREARG A:258binding site for residue CL A 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4WFS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4WFS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4WFS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4WFS)

(-) Exons   (0, 0)

(no "Exon" information available for 4WFS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:306
                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.......hhhhhhhhhhhh..eee...eehhhhh..eeeee....eeeee.....eeeeehhhhh..eeeeee..hhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhh....eeeeeee.........hhhhhhhhhhhh...eeee..........hhhhhhhhhh...eeeehhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4wfs A  12 HHLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREICEAFGLGAFYEETTQELDAQ 330
                                    21        31        41        51        61        71        81        91       101       111   ||  134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324      
                                                                                                                                 115|                                                                                                                                                                                                         
                                                                                                                                  129
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4WFS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4WFS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4WFS)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        DUS2L_HUMAN | Q9NX74: 4wft 4xp7

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