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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERISED PROTEIN COCH_1243 FROM CAPNOCYTOPHAGA OCHRACEA DSM 7271
 
Authors :  C. Chang, R. Wu, S. Clancy, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date :  27 Aug 14  (Deposition) - 10 Sep 14  (Release) - 10 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Unknown Function, Geba (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, R. Wu, S. Clancy, A. Joachimiak
Crystal Structure Of Uncharacterised Protein Coch_1243 From Capnocytophaga Ochracea Dsm 7271
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG68
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: COCH_1243
    Organism Scientific: CAPNOCYTOPHAGA OCHRACEA
    Organism Taxid: 521097
    Strain: ATCC 27872 / DSM 7271 / JCM 12966 / VPI 2845

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 31)

Asymmetric/Biological Unit (3, 31)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL4Ligand/IonGLYCEROL
3MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:246 , MSE A:247 , ASP A:250 , GLY B:230 , SER B:232binding site for residue GOL A 501
2AC2SOFTWAREGLY A:324binding site for residue GOL A 502
3AC3SOFTWAREGLY A:230 , SER A:232 , ASP B:246 , ASP B:250binding site for residue ACT A 504
4AC4SOFTWARETYR A:301 , GLU A:337 , ARG A:372 , ASP B:362binding site for residue ACT A 505
5AC5SOFTWAREGLY B:324binding site for residue GOL B 501
6AC6SOFTWAREASP A:362 , TYR B:301 , GLU B:337 , ARG B:372binding site for residue ACT B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4W9R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4W9R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4W9R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4W9R)

(-) Exons   (0, 0)

(no "Exon" information available for 4W9R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee....eeeeeeee..........eeeeee.hhhhhhhhhhhhhhhhhhh......eeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.......eeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhh.......eeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4w9r A  20 QVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAETLmEPVVSmVRYYEQFGEmPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADLKGVIASEEAGFLANYYmLAEKKPTFNmIVSLNPVALPRmGEEFSHALAAGVPNRLFYYmATADVENKVVYDKAIQFERAmRSAPVHESVEYHFVDFKGSSVNAAKLQGIAQALDmCFDIYKPIGGKEFKTQmETLETGIYEYLENKYNTIYKQLGVKKVPILNDVmATYTAINSSQDWESLKKLAKYVESNGYLKTAmPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQAT 379
                                    29        39        49        59   |    69        79        89        99       109       119       129       139       149       159       169 |     179       189 |     199       209  |    219       229       239       249       259    |  269       279       289       299       309       319       329|      339       349       359       369       379
                                                                      63-MSE |        79-MSE                                                               149-MSE   159-MSE     171-MSE             191-MSE              212-MSE                            247-MSE          264-MSE                           298-MSE                         330-MSE                                             
                                                                            69-MSE                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeeeeeee..........eeeeee.hhhhhhhhhhhhhhhhhhh......eeeee...hhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.eeeeeeeeeehhhhhhhhhhhhh.......eeeeeee..hhhhhhhhhhhhhhh....eeeeeeeeee.hhhhhhhhhhhhhhhh.......eeeeeeeeeeeehhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4w9r B  19 AQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAETLmEPVVSmVRYYEQFGEmPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPIADLKGVIASEEAGFLANYYmLAEKKPTFNmIVSLNPVALPRmGEEFSHALAAGVPNRLFYYmATADVENKVVYDKAIQFERAmRSAPVHESVEYHFVDFKGSSVNAAKLQGIAQALDmCFDIYKPIGGKEFKTQmETLETGIYEYLENKYNTIYKQLGVKKVPILNDVmATYTAINSSQDWESLKKLAKYVESNGYLKTAmPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQAT 379
                                    28        38        48        58    |   68|       78|       88        98       108       118       128       138       148|      158|      168  |    178       188  |    198       208   |   218       228       238       248       258     | 268       278       288       298       308       318       328 |     338       348       358       368       378 
                                                                       63-MSE |        79-MSE                                                               149-MSE   159-MSE     171-MSE             191-MSE              212-MSE                            247-MSE          264-MSE                           298-MSE                         330-MSE                                             
                                                                             69-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4W9R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4W9R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4W9R)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4W9R)

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