4V1L - JenaLib

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Title :   HIGH RESOLUTION STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 9 (CEL9A) FROM RUMINOCOCCUS FLAVEFACIENS FD-1

Authors :   I. Venditto, A. Goyal, A. Thompson, L. M. A. Ferreira, C. M. G. A. Fontes, S. Najmudin

Date :   29 Sep 14 (Deposition) - 20 Jan 16 (Release) - 13 Jul 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Sugar Binding Protein, Cel9A, Cellulosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Venditto, A. S. Luis, M. Rydahl, J. Schuckel, V. O. Fernandes, S. Vidal-Melgosa, P. Bule, A. Goyal, V. M. R. Pires, C. G. Dourado, L. M. A. Ferreira, P. M. Coutinho, B. Henrissat, J. P. Knox, A. Basle, S. Najmudin, H. J. Gilbert, W. G. T. Willats, C. M. G. A. Fontes
Complexity Of The Ruminococcus Flavefaciens Cellulosome Reflects An Expansion In Glycan Recognition.
Proc. Natl. Acad. Sci. Usa V. 113 7136 2016
PubMed-ID: 27298375 | Reference-DOI: 10.1073/PNAS.1601558113
(for further references see the PDB file header)

Molecule 1 - CARBOHYDRATE BINDING MODULE
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI B
	Expression System Plasmid	:	PET-28A
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	37762
	Expression System Vector Type	:	PLASMID
	Fragment	:	CARBOHYDRATE BINDING MODULE, RESIDUES 492-629
	Organism Scientific	:	RUMINOCOCCUS FLAVEFACIENS
	Organism Taxid	:	641112
	Strain	:	FD-1

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	P6G	3	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	P6G	1	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PG4	-1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	P6G	-1	Ligand/Ion	HEXAETHYLENE GLYCOL
3	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
4	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG B:515 , SER B:555 , GLY B:562 , TYR B:563 , TRP B:564 , GLY B:598 , PGE B:1628 , HOH B:2020 , HOH B:2027 , HOH B:2127	BINDING SITE FOR RESIDUE P6G B1625
2	AC2	SOFTWARE	GLU A:512 , SER A:555 , GLY A:562 , TRP A:564 , TYR A:597 , GLY A:598 , GOL A:1626 , HOH A:2074 , HOH A:2134 , HOH A:2135	BINDING SITE FOR RESIDUE P6G A1625
3	AC3	SOFTWARE	TRP A:607 , HOH B:2128 , TRP C:607	BINDING SITE FOR RESIDUE P6G B1626
4	AC4	SOFTWARE	P6G A:1625 , HOH A:2019 , HOH A:2030	BINDING SITE FOR RESIDUE GOL A1626
5	AC5	SOFTWARE	SER A:508 , LEU A:510 , HOH A:2020 , HOH A:2021 , HOH A:2031 , ILE B:570 , THR B:571	BINDING SITE FOR RESIDUE GOL B1627
6	AC6	SOFTWARE	GLU A:569 , ILE A:570 , THR A:571 , HOH A:2096 , HOH A:2097 , HOH A:2136 , SER C:508 , LEU C:510	BINDING SITE FOR RESIDUE GOL A1627
7	AC7	SOFTWARE	TRP C:606 , HOH C:2081	BINDING SITE FOR RESIDUE PG4 C1625
8	AC8	SOFTWARE	SER B:508 , LEU B:510 , ARG B:515 , HOH B:2022 , HOH B:2028 , GLU C:569 , THR C:571 , HOH C:2087	BINDING SITE FOR RESIDUE PGE C1626
9	AC9	SOFTWARE	GLU B:512 , ASP B:513 , GLU B:514 , ARG B:515 , TRP B:564 , LYS B:602 , P6G B:1625 , HOH B:2025 , HOH B:2127	BINDING SITE FOR RESIDUE PGE B1628

(no "SS Bond" information available for 4V1L)

(no "Cis Peptide Bond" information available for 4V1L)

(no "SAP(SNP)/Variant" information available for 4V1L)

(no "PROSITE Motif" information available for 4V1L)

(no "Exon" information available for 4V1L)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeee.hhh.....eeeee.hhh.......eeeeeeeee.....eeeee.eeee..hhhhh.eee...eeeee...eeeeeee.hhhhhh........eeeee..ee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v1l A 494 SDGYTIKPNKKVTYSALGEDERMIGFSYKDFGISSSEKITEVQVNISANKNIGKYVGQFGTSTTDSANGYWAMGDEITQSISGNSGTITWKVPSDISSIIQTQYGGEIKFGVWWIDCDEFTIDSVVLKLEH 624
                                   503       513       523       533       543       553       563       573       583       593       603       613       623

Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeee.hhh.....eeeee.hhh.......eeeeeeeee.....eeeee.eeee..hhhhh.eee...eeeee...eeeeeee.hhhhhh........eeeee..ee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v1l B 494 SDGYTIKPNKKVTYSALGEDERMIGFSYKDFGISSSEKITEVQVNISANKNIGKYVGQFGTSTTDSANGYWAMGDEITQSISGNSGTITWKVPSDISSIIQTQYGGEIKFGVWWIDCDEFTIDSVVLKLEH 624
                                   503       513       523       533       543       553       563       573       583       593       603       613       623

Chain C from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eeee.hhh.....eeeee.hhh.......eeeeeeeee.....eeeee.eeee..hhhhh.eee...eeeee...eeeeeee.hhhhhh........eeeee..ee...eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4v1l C 494 SDGYTIKPNKKVTYSALGEDERMIGFSYKDFGISSSEKITEVQVNISANKNIGKYVGQFGTSTTDSANGYWAMGDEITQSISGNSGTITWKVPSDISSIIQTQYGGEIKFGVWWIDCDEFTIDSVVLKLEH 624
                                   503       513       523       533       543       553       563       573       583       593       603       613       623

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(no "SCOP Domain" information available for 4V1L)

(no "CATH Domain" information available for 4V1L)

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4v17	STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1
4v18	SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1
4v1b	STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 COLLECTED AT THE ZN EDGE
4v1i	STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 5 GLUCANASE FROM RUMINOCOCCUS FLAVEFACIENS FD-1 AT MEDIUM RESOLUTION
4v1k	SEMET STRUCTURE OF A NOVEL CARBOHYDRATE BINDING MODULE FROM GLYCOSIDE HYDROLASE FAMILY 9 (CEL9A) FROM RUMINOCOCCUS FLAVEFACIENS FD-1

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Ligands, Modified Residues, Ions (4, 9)

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