4V0R - JenaLib

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Title :   DENGUE VIRUS FULL LENGTH NS5 COMPLEXED WITH GTP AND SAH

Authors :   Y. Zhao, S. Soh, J. Zheng, W. W. Phoo, K. Swaminathan, T. C. Cornvik, S. P. P. -Y. Shi, J. Lescar, S. G. Vasudevan, D. Luo

Date :   18 Sep 14 (Deposition) - 28 Jan 15 (Release) - 25 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Transferase, Methyltransferase, Rna-Dependent Rna Polymerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhao, T. S. Soh, J. Zheng, K. W. K. Chan, W. W. Phoo, C. C. Lee, M. Y. F. Tay, K. Swaminathan, T. C. Cornvik, S. P. Lim, P. Shi, J. Lescar, S. G. Vasudevan, D. Luo
A Crystal Structure Of The Dengue Virus Ns5 Protein Reveals A Novel Inter-Domain Interface Essential For Protein Flexibility And Virus Replication.
Plos Pathog. V. 11 04682 2015
PubMed-ID: 25775415 | Reference-DOI: 10.1371/JOURNAL.PPAT.1004682

Molecule 1 - NS5 POLYMERASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Variant	:	CODON PLUS
	Expression System Vector	:	PNIC28-BSA4
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 2494-3385
	Organism Scientific	:	DENGUE VIRUS 3
	Organism Taxid	:	11069
	Strain	:	SINGAPORE STRAIN

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 10)

No.	Name	Count	Type	Full Name
1	FMT	3	Ligand/Ion	FORMIC ACID
2	GOL	1	Ligand/Ion	GLYCEROL
3	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
4	MG	2	Ligand/Ion	MAGNESIUM ION
5	SAH	1	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
6	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (4, 12)

No.	Name	Count	Type	Full Name
1	FMT	6	Ligand/Ion	FORMIC ACID
2	GOL	2	Ligand/Ion	GLYCEROL
3	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	SAH	2	Ligand/Ion	S-ADENOSYL-L-HOMOCYSTEINE
6	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:437 , HIS A:441 , CYS A:446 , CYS A:449	BINDING SITE FOR RESIDUE ZN A1001
02	AC2	SOFTWARE	HIS A:712 , HIS A:714 , CYS A:728 , CYS A:847	BINDING SITE FOR RESIDUE ZN A1002
03	AC3	SOFTWARE	SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , GLU A:111 , LYS A:130 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , HOH A:2048 , HOH A:2076	BINDING SITE FOR RESIDUE SAH A1051
04	AC4	SOFTWARE	LYS A:14 , LEU A:17 , ASN A:18 , LEU A:20 , ARG A:22 , PHE A:25 , LYS A:29 , SER A:150 , SER A:151 , PRO A:152 , ARG A:211 , SER A:213 , MG A:1886 , HOH A:2004 , HOH A:2007	BINDING SITE FOR RESIDUE GTP A1884
05	AC5	SOFTWARE	ASP A:533 , ASP A:664 , HOH A:2308 , HOH A:2309 , HOH A:2314 , HOH A:2371	BINDING SITE FOR RESIDUE MG A1885
06	AC6	SOFTWARE	GTP A:1884 , HOH A:2007	BINDING SITE FOR RESIDUE MG A1886
07	AC7	SOFTWARE	ARG A:540 , GLN A:693	BINDING SITE FOR RESIDUE FMT A1887
08	AC8	SOFTWARE	HIS A:52 , ARG A:688	BINDING SITE FOR RESIDUE FMT A1888
09	AC9	SOFTWARE	ARG A:38 , LYS A:42 , ARG A:84	BINDING SITE FOR RESIDUE FMT A1889
10	BC1	SOFTWARE	TYR A:119 , ASP A:256 , LEU A:257 , LYS A:300 , LYS A:355 , THR A:360 , HOH A:2205	BINDING SITE FOR RESIDUE GOL A1890

(no "SS Bond" information available for 4V0R)

(no "Cis Peptide Bond" information available for 4V0R)

(no "SAP(SNP)/Variant" information available for 4V0R)

(no "PROSITE Motif" information available for 4V0R)

(no "Exon" information available for 4V0R)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:852
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh.hhhhhhhhh....eee.hhhhhhhhhh.........hhhhhhhhhhhh......eeeeee....hhhhhhhh....eeeeeee................hhh.eeee...hhhhh......eeee.......hhhhhhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhhhhhh.eee...........eeee.....hhhhhhhhhhhhhhhhhhh.....eee..........hhhhh....hhhhhhhhhhhhhhhh...............eeeeeee...........hhhhhhhhhhhh.hhhhhhh.....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhh.......ee....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh......hhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhhhhhhhhh.eeee..eeee...hhhhhhhhhhhhhh.................hhhhh.....eeeeee.....eeeeee.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...........................hhhhhhhhhhh.....................hhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4v0r A   6 GETLGEKWKKKLNQLSRKEFDLYKKSGITEVDRTEAKEGLKRGETTHHAVSRGSAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKNNQFCIKVLNPYMPTVIEHLERLQRKHGGMLVRNPLSRNSTHEMYWISNGTGNIVSSVNMVSRLLLNRFTMTHRRPTIEKDVDLGAGTRHVNAEPETPNMDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVKATGSASSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLPGTRKVMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNYDSAKAAVEDEEFWKLVDRERELHKLGKCGSCVYNMMGSRAIWYMWLGVRYLEFEALGFLNEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAGWDTRITEDDLHNEEKIIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTGTVMDIISRKDQRGSGQVGTYGLNTFTNMEAQLVRQMEGEGVLTKADLENPHLLEKKITQWLETKGVERLKRMAISGDDCVVKPIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQDELIGRARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWVPTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCGSLIGLTSRATWAQNIPTAIQQVRSLIGNEEFLDYM 883
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                                                                                                                                                                                                                                                                                                                                                                                                                                          418                                  469

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(no "SCOP Domain" information available for 4V0R)

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4v0q	DENGUE VIRUS FULL LENGTH NS5 COMPLEXED WITH SAH

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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Gene Ontology (62, 107)

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