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(-) Description

Title :  SULFUR SAD PHASED STRUCTURE OF A TYPE IV PILUS PROTEIN FROM SHEWANELLA ONEIDENSIS
 
Authors :  M. Gorgel, A. Boeggild, J. J. Ulstrup, U. Mueller, M. Weiss, P. Nissen, T
Date :  03 Jul 14  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.96
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cell Adhesion, Type Iv Pilin, Sulfur Sad, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Gorgel, J. J. Ulstrup, A. Boggild, N. C. Jones, S. V. Hoffmann, P. Nissen, T. Boesen
High-Resolution Structure Of A Type Iv Pilin From The Metal- Reducing Bacterium Shewanella Oneidensis.
Bmc Struct. Biol. V. 15 4 2015
PubMed-ID: 25886849  |  Reference-DOI: 10.1186/S12900-015-0031-7

(-) Compounds

Molecule 1 - PILD PROCESSED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ORIGAMI
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 36-123
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Other Details: CYSTEINE BRIDGE BETWEEN CYS69 AND CYS86 IN CHAIN A CYSTEINE BRIDGE BETWEEN CYS69 AND CYS86 IN CHAIN B
    Strain: MR-1
    Synonym: TYPE IV PILUS PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:5 , GLY B:1 , LYS B:2 , GLN B:3 , GLY B:4BINDING SITE FOR RESIDUE SO4 B1090
2AC2SOFTWARELEU B:36 , ASN B:38 , PHE B:44 , HOH B:2021 , HOH B:2022 , HOH B:2024BINDING SITE FOR RESIDUE NA B1091

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:69 -A:86
2B:69 -B:86

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:81 -Pro A:82
2Val B:81 -Pro B:82

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4US7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4US7)

(-) Exons   (0, 0)

(no "Exon" information available for 4US7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee......eeeeeee..........eeee....ee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  4us7 A  1 GKQGRRFDAQQYLVTSAQALERHYSRNGLYPASQSLANSPYYSFSYTPTADKFGFSLKAVPTNRQSDPCGTLSLDHKGVRVPATNCWSH 89
                                    10        20        30        40        50        60        70        80         


Chain B from PDB  Type:PROTEIN  Length:89
                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeeeee......eeeeeee..........eeee....ee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------- Transcript
                  4us7 B  1 GKQGRRFDAQQYLVTSAQALERHYSRNGLYPASQSLANSPYYSFSYTPTADKFGFSLKAVPTNRQSDPCGTLSLDHKGVRVPATNCWSH 89
                                    10        20        30        40        50        60        70        80
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4US7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4US7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4US7)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        Q8EII5_SHEON | Q8EII5: 4d40

(-) Related Entries Specified in the PDB File

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