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(-) Description

Title :  PHOSPHONATE MONOESTER HYDROLASE SPPMH FROM SILICIBACTER POMEROYI
 
Authors :  E. Valkov, B. Van Loo, F. Hollfelder, M. Hyvonen
Date :  17 Jun 14  (Deposition) - 01 Jul 15  (Release) - 01 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.24
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A (2x),B (2x)
Biol. Unit 2:  C  (4x)
Biol. Unit 3:  A (2x),B (2x)
Keywords :  Hydrolase, Alakaline Phosphatase Superfamily, Promiscuity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Van Loo, C. D. Bayer, G. Fischer, S. Jonas, E. Valkov, M. F. Mohamed, A. Vorobieva, C. Dutruel, M. Hyvonen, F. Hollfelder
Catalytic Promiscuity And Evolution Of Function In The Alkaline Phosphatase Superfamily: Phosphonate Monoester Hydrolases And Aryl Sulfatases
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHONATE MONOESTER HYDROLASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK-IBA5PLUS
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: RUEGERIA POMEROYI
    Organism Taxid: 246200
    Other Details: GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURE (DSMZ)
    Strain: DSS-3

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): A (2x)B (2x) 
Biological Unit 2 (4x):   C
Biological Unit 3 (2x): A (2x)B (2x) 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4UPK)

(-) Sites  (0, 0)

(no "Site" information available for 4UPK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UPK)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Asn A:51 -Pro A:52
2Arg A:212 -Pro A:213
3Pro A:215 -Pro A:216
4Ala A:221 -Pro A:222
5Asn B:51 -Pro B:52
6Arg B:212 -Pro B:213
7Pro B:215 -Pro B:216
8Ala B:221 -Pro B:222
9Asn C:51 -Pro C:52
10Arg C:212 -Pro C:213
11Pro C:215 -Pro C:216
12Ala C:221 -Pro C:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UPK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UPK)

(-) Exons   (0, 0)

(no "Exon" information available for 4UPK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhh..hhhhh.hhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhh.............hhhhhhhhh...eeeee......hhhhh...hhhhh.........eeeee.....hhhhhhhhhhh.....hhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.................hhhhh.......hhhhhhhh..hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee......hhhhh......hhhhh...eeee........eeeeeee..hhhhhhhhhhh...........hhhhhh..........eeeeee.......hhhhhhhh......eeeeee...eeeeee......eeee.....hhh....hhhhhhhhhhhhhhhhhhhhhh.......eeee..eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upk A   4 QSNVLFIIIDQLRADCLWGALADHVELPHLRALAQDAVSFRRHYSVTNPCGPSRASILTGQYAMNHRSVRNGTPLRHDTPNIATEMRKAGYLPLLFGYTDTSQDPRAYDANDPALKTYEFPMRGFHEVTEMRLEMSYPWQSHLKNRGYAFDDYAQVYVPRPDADGTPRLNGPAMYRAEDSDTAFLTDQFLANMPAWAGQNWFAHLTYIRPHPPLVAPAPYNTMYDPAKLPLPARLPGRDDETAEHPFFGPATRYSSPASFVLGFPDLEPTDETIQTLRAVYLGLATEVDTHIGRVIAHLKETGQYDDTLIVVTADHGEMLGDRHSWGKMTVYDAAYHTPLIIRAPGCKPGHVVEAPTESIDLMPTILDWVGQEIPNAVDGRSLRPFLTGEAPSDWRQYSFSELDISEPLDPTLWQQEFGFGPSAGAVAILRDARFTLVEFAADLPPMLFDHQGEGEFRNVAGDPAHAADLARLSRQMLRHRMRNMDHTLSLCSITHEGARTQRRYD 509
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503      


Chain B from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhh..hhhhh.hhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhh.............hhhhhhhhh...eeeee......hhhhh...hhhhh.........eeeee.....hhhhhhhhhhhh....hhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.................hhhhh.......hhhhhhh...hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee......hhhhh......hhhhh...eeee........eeeeeee..hhhhhhhhhhh...........hhhhhh..........eeeeee.......hhhhhhhh......eeeeee...eeeeee......eeee.....hhh....hhhhhhhhhhhhhhhhhhhhhh.......eeee..eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upk B   4 QSNVLFIIIDQLRADCLWGALADHVELPHLRALAQDAVSFRRHYSVTNPCGPSRASILTGQYAMNHRSVRNGTPLRHDTPNIATEMRKAGYLPLLFGYTDTSQDPRAYDANDPALKTYEFPMRGFHEVTEMRLEMSYPWQSHLKNRGYAFDDYAQVYVPRPDADGTPRLNGPAMYRAEDSDTAFLTDQFLANMPAWAGQNWFAHLTYIRPHPPLVAPAPYNTMYDPAKLPLPARLPGRDDETAEHPFFGPATRYSSPASFVLGFPDLEPTDETIQTLRAVYLGLATEVDTHIGRVIAHLKETGQYDDTLIVVTADHGEMLGDRHSWGKMTVYDAAYHTPLIIRAPGCKPGHVVEAPTESIDLMPTILDWVGQEIPNAVDGRSLRPFLTGEAPSDWRQYSFSELDISEPLDPTLWQQEFGFGPSAGAVAILRDARFTLVEFAADLPPMLFDHQGEGEFRNVAGDPAHAADLARLSRQMLRHRMRNMDHTLSLCSITHEGARTQRRYD 509
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503      


Chain C from PDB  Type:PROTEIN  Length:506
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhh..hhhhh.hhhhhhhhhh.eeeeeee....hhhhhhhhhhhh.hhhhhh.............hhhhhhhhh...eeeee......hhhhh...hhhhh.........eeeee.....hhhhhhhhhhh.....hhhhhhh.................hhhhhhhhhhhhhhhhhhhhhh....eeeeee.................hhhhh.......hhhhhhhhh.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee......hhhhh......hhhhh...eeee........eeeeeee..hhhhhhhhhhh...........hhhhhh..........eeeeee.......hhhhhhhh......eeeeee...eeeeee......eeee.....hhh....hhhhhhhhhhhhhhhhhhhhhh.......eeee..eeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4upk C   4 QSNVLFIIIDQLRADCLWGALADHVELPHLRALAQDAVSFRRHYSVTNPCGPSRASILTGQYAMNHRSVRNGTPLRHDTPNIATEMRKAGYLPLLFGYTDTSQDPRAYDANDPALKTYEFPMRGFHEVTEMRLEMSYPWQSHLKNRGYAFDDYAQVYVPRPDADGTPRLNGPAMYRAEDSDTAFLTDQFLANMPAWAGQNWFAHLTYIRPHPPLVAPAPYNTMYDPAKLPLPARLPGRDDETAEHPFFGPATRYSSPASFVLGFPDLEPTDETIQTLRAVYLGLATEVDTHIGRVIAHLKETGQYDDTLIVVTADHGEMLGDRHSWGKMTVYDAAYHTPLIIRAPGCKPGHVVEAPTESIDLMPTILDWVGQEIPNAVDGRSLRPFLTGEAPSDWRQYSFSELDISEPLDPTLWQQEFGFGPSAGAVAILRDARFTLVEFAADLPPMLFDHQGEGEFRNVAGDPAHAADLARLSRQMLRHRMRNMDHTLSLCSITHEGARTQRRYD 509
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UPK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UPK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UPK)

(-) Gene Ontology  (6, 6)

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  Cis Peptide Bonds
    Ala A:221 - Pro A:222   [ RasMol ]  
    Ala B:221 - Pro B:222   [ RasMol ]  
    Ala C:221 - Pro C:222   [ RasMol ]  
    Arg A:212 - Pro A:213   [ RasMol ]  
    Arg B:212 - Pro B:213   [ RasMol ]  
    Arg C:212 - Pro C:213   [ RasMol ]  
    Asn A:51 - Pro A:52   [ RasMol ]  
    Asn B:51 - Pro B:52   [ RasMol ]  
    Asn C:51 - Pro C:52   [ RasMol ]  
    Pro A:215 - Pro A:216   [ RasMol ]  
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(-) Related Entries Specified in the PDB File

4upi DIMERIC SULFATASE SPAS1 FROM SILICIBACTER POMEROYI
4upl DIMERIC SULFATASE SPAS2 FROM SILICIBACTER POMEROYI