4UON - JenaLib

Title :   CRYSTAL STRUCTURE OF C-TERMINAL TRUNCATED (110-265) AURA VIRUS CAPSID PROTEASE.

Authors :   M. Aggarwal, P. Kumar, S. Tomar

Date :   05 Jun 14 (Deposition) - 18 Jun 14 (Release) - 22 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.81

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Aggarwal, S. Dhindwal, P. Kumar, R. J. Kuhn, S. Tomar
Trans-Protease Activity And Structural Insights Into The Active Form Of The Alphavirus Capsid Protease.
J. Virol. V. 88 12242 2014
PubMed-ID: 25100849 | Reference-DOI: 10.1128/JVI.01692-14

Compounds

Molecule 1 - CAPSID PROTEASE
	Chains	:	A, B
	EC Number	:	3.4.21.90
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Variant	:	ROSETTA PLYSS
	Expression System Vector	:	PET28C
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 110-265
	Organism Scientific	:	AURA VIRUS
	Organism Taxid	:	44158
	Synonym	:	P130, COAT PROTEIN, C, E3/E2, SPIKE GLYCOPROTEIN E3, SPIKE GLYCOPROTEIN E2, SPIKE GLYCOPROTEIN E1

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 6)

Asymmetric Unit (1, 6)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:-1	BINDING SITE FOR RESIDUE GOL A1262
2	AC2	SOFTWARE	GLY A:147 , THR A:148 , ILE A:149 , PHE A:159 , GLU A:168 , HOH A:2081	BINDING SITE FOR RESIDUE GOL A1263
3	AC3	SOFTWARE	GLY A:213 , GLY A:214 , ASP A:217 , SER A:218 , GLY A:235 , LEU A:245 , HOH A:2227	BINDING SITE FOR RESIDUE GOL A1264
4	AC4	SOFTWARE	GLY B:147 , THR B:148 , ILE B:149 , ALA B:155 , PHE B:159 , GLU B:168 , HOH B:2056 , HOH B:2172	BINDING SITE FOR RESIDUE GOL B1262
5	AC5	SOFTWARE	TYR B:131 , HIS B:196 , GLY B:213 , GLY B:214 , GLY B:216 , ASP B:217 , ARG B:220	BINDING SITE FOR RESIDUE GOL B1263
6	AC6	SOFTWARE	TRP B:194 , GLY B:214 , ASP B:217 , SER B:218 , GLY B:236 , HOH B:2136	BINDING SITE FOR RESIDUE GOL B1264

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeee.....eeeeeeee..eeeee.....ee...hhhhh..eeehhh.eeeee.hhhhh............eeeee..eeeeee..eeeee....hhhhh..eee.....eeeeeeeeee...eeeeeeeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uon A  -1 HMALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTH 261
                             ||    117       127       137       147       157       167       177       187       197       207       217       227       237       247       257    
                             0|                                                                                                                                                       
                            110

Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.....eeeeeeee..eeeee.....ee.hhhhhh...eeehhh.eeeee.hhhhhhhh.........eeeee..eeeeee..eeeee....hhhhh..eee.....eeeeeeeeee...eeeeeeeee.....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uon B 110 ALKFEADRTFAVKNEDGKIMGYAVAMEGKVIKPLHVKGTIDHPALAKLKFTKSSSYDMEFAKLPTEMKSDAFGYTTEHPEGFYNWHHGAVQFSGGRFTIPTGAGGPGDSGRPILDNSGKVVAIVLGGANEGARTALSVVTWNKKGAAIKTTH 261
                                   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0 ; only for superseded entry 4AUS: 1,2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (21, 21)

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	Cis Peptide Bonds
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Biological Units
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		Biological Unit 2	[ Jena3D ]

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