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(-) Description

Title :  INDUCED MONOMER OF THE MCG VARIABLE DOMAIN
 
Authors :  B. Brumshtein, S. R. Esswein, M. Landau, C. M. Ryan, J. P. Whitelegge, M. L. Phillips, D. Cascio, M. R. Sawaya, D. S. Eisenberg
Date :  30 May 14  (Deposition) - 27 Aug 14  (Release) - 15 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Immune System, Bence-Jones, Light Chains, Immunoglobulin, Amyloid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Brumshtein, S. R. Esswein, M. Landau, C. M. Ryan, J. P. Whitelegge, M. L. Phillips, D. Cascio, M. R. Sawaya, D. S. Eisenberg
Formation Of Amyloid Fibers By Monomeric Light-Chain Variable Domains.
J. Biol. Chem. V. 289 27513 2014
PubMed-ID: 25138218  |  Reference-DOI: 10.1074/JBC.M114.585638

(-) Compounds

Molecule 1 - IG LAMBDA CHAIN V-II REGION MGC
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET26B
    Expression System Vector Type: PLASMID
    Fragment: LIGHT-CHAIN VARIABLE DOMAIN, RESIDUES 1-110
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MCG-MONOMER
    Tissue: BLOOD

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 13)

Asymmetric/Biological Unit (1, 13)
No.NameCountTypeFull Name
1SO413Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO D:57 , SER D:58 , SER H:96 , ASP H:97BINDING SITE FOR RESIDUE SO4 H1111
02AC2SOFTWARESER C:96 , ASP C:97 , TYR F:51 , PRO F:57 , SER F:58BINDING SITE FOR RESIDUE SO4 C1111
03AC3SOFTWARETYR C:34 , VAL C:35 , SER C:36 , TYR C:51 , GLU C:52BINDING SITE FOR RESIDUE SO4 C1112
04AC4SOFTWAREPRO C:57 , SER C:58 , SER G:96 , ASP G:97BINDING SITE FOR RESIDUE SO4 C1113
05AC5SOFTWARESER C:69 , GLY C:70BINDING SITE FOR RESIDUE SO4 C1114
06AC6SOFTWARELYS A:106 , HIS H:41 , ALA H:42 , GLU H:85 , ALA H:86BINDING SITE FOR RESIDUE SO4 H1112
07AC7SOFTWAREPRO B:57 , SER B:58 , SER E:96 , ASP E:97BINDING SITE FOR RESIDUE SO4 E1111
08AC8SOFTWARESER A:96 , ASP A:97 , TYR G:51 , PRO G:57 , SER G:58BINDING SITE FOR RESIDUE SO4 A1111
09AC9SOFTWARETYR A:34 , VAL A:35 , SER A:36 , TYR A:51 , GLU A:52BINDING SITE FOR RESIDUE SO4 A1112
10BC1SOFTWAREPRO A:57 , SER A:58 , SER F:96 , ASP F:97BINDING SITE FOR RESIDUE SO4 F1111
11BC2SOFTWAREGLY A:70BINDING SITE FOR RESIDUE SO4 A1113
12BC3SOFTWARETYR D:34 , VAL D:35 , SER D:36 , TYR D:51 , GLU D:52BINDING SITE FOR RESIDUE SO4 D1111
13BC4SOFTWAREPRO E:61 , ARG E:63 , GLN E:81 , GLU E:83BINDING SITE FOR RESIDUE SO4 E1112

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:90
2B:22 -B:90
3C:22 -C:90
4D:22 -D:90
5E:22 -E:90
6F:22 -F:90
7G:22 -G:90
8H:22 -H:90

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UNT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UNT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UNT)

(-) Exons   (0, 0)

(no "Exon" information available for 4UNT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt A   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain B from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt B   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain C from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee....eeeee....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt C   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain D from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt D   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain E from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eeee..eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt E   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain F from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt F   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain G from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 4unt G   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101         


Chain H from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee......eeee...........eeeeee......eeee................eee..eeee...eeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4unt H   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWEQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLEDEADYYCSSYEGSDNAVEGTGTKVTVL 110
                                    11        21        31        41        51        61        71   ||   88        98       108  
                                                                                                    75|                           
                                                                                                     83
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UNT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UNT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UNT)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LV208_HUMAN | P01709: 1a8j 1dcl 1mcw 2mcg 3mcg 4unu 4unv 5acl 5acm

(-) Related Entries Specified in the PDB File

4unu MCG - A DIMER OF LAMBDA VARIABLE DOMAINS
4unv COVALENT DIMER OF LAMBDA VARIABLE DOMAINS