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(-) Description

Title :  CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.1 WITH QUININE
 
Authors :  J. Zhu, J. Zhu, D. W. Bougie, R. H. Aster, T. A. Springer
Date :  30 Mar 15  (Deposition) - 02 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym./Biol. Unit :  H,L
Keywords :  Immune System, Fab, Quinine-Dependent, Mouse Mab (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Zhu, J. Zhu, D. W. Bougie, R. H. Aster, T. A. Springer
Structural Basis For Quinine-Dependent Antibody Binding To Platelet Integrin Alphaiib Beta3
Blood V. 126 2138 2015
PubMed-ID: 26282540  |  Reference-DOI: 10.1182/BLOOD-2015-04-639351

(-) Compounds

Molecule 1 - FAB 314.1
    Chains: H
    Fragment: FAB, HEAVY CHAIN, RESIDUES 1-222
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: ASCITES FLUID
 
Molecule 2 - FAB 314.1
    Chains: L
    Fragment: FAB, LIGHT CHAIN, RESIDUES 1-213
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: ASCITES FLUID

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : HL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1QI91Ligand/IonQUININE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP H:33 , HIS H:35 , SER H:59 , GLU H:99 , TYR H:104 , SER H:106 , PHE H:109 , GLN L:90 , GLY L:91 , ASN L:92 , THR L:93 , LEU L:94 , PRO L:96BINDING SITE FOR RESIDUE QI9 H1223

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:96
2H:149 -H:204
3L:23 -L:88
4L:134 -L:194

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe H:155 -Pro H:156
2Glu H:157 -Pro H:158
3Trp H:197 -Pro H:198
4Leu L:94 -Pro L:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UIL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UIL)

(-) Exons   (0, 0)

(no "Exon" information available for 4UIL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....ee..eeee..hhhhh.eeeeee.....eeeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeee.........eeee...eeeee..........eee......eeeeeee.........eee..........ee...ee....ee.eeeeeee.hhhhhh..eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uil H   1 AVQLQESGTVLARPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIYPGNSDTSYNQKFKGKAKLTAVTSTSTAYMELSSLTNEDSAVYYCTRERGLYYGSSSFDYWGQGTTLTVSSAETTPPSVYPLAPGTSSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPR 222
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     ||144       154       164       174       184       194       204       214        
                                                                                                                                                                 136||                                                                                
                                                                                                                                                                  140|                                                                                
                                                                                                                                                                   142                                                                                


Chain L from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee............eeeeee........eeeeee.....eeeeee...ee...............eeeeee...hhhhh.eeeeee...........ee..........eeeee..hhhhhh..eeeeeeeeeee.....eeeee....ee...eeeee.........eeeeeeeeeehhhhh...eeeeeee.......eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uil L   1 DIVMTQTTSSLSASLGDRVTISCRASQDISNYLSWYQQKPDGTVKVLIYYTSKLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNTLPPTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNE 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UIL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UIL)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4UIL)

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(-) Related Entries Specified in the PDB File

4uik CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.1
4uim CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.3
4uin CRYSTAL STRUCTURE OF QUININE-DEPENDENT FAB 314.3 WITH QUININE