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(-) Description

Title :  HUMAN STEROL 14-ALPHA DEMETHYLASE (CYP51) IN COMPLEX WITH VFV IN C121 SPACE GROUP
 
Authors :  T. Y. Hargrove, Z. Wawrzak, G. I Lepesheva
Date :  24 Mar 15  (Deposition) - 08 Jun 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.04
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Monooxygenase, Sterol Biosynthesis, Eukaryotic Membranes, Cytochrome P450 Fold, Endoplasmic Reticulum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Y. Hargrove, L. Friggeri, Z. Wawrzak, S. Sivakumaran, E. M. Yazlovitskaya, S. W. Hiebert, F. P. Guengerich, M. R. Waterman, G. I. Lepesheva
Human Sterol 14Alpha-Demethylase (Cyp51) As A Target For Anticancer Chemotherapy: Towards Structure-Aided Drug Design.
J. Lipid Res. V. 57 1552 2016
PubMed-ID: 27313059  |  Reference-DOI: 10.1194/JLR.M069229

(-) Compounds

Molecule 1 - STEROL 14-ALPHA DEMETHYLASE
    Chains: A, B, C, D
    EC Number: 1.14.13.70
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCW
    Expression System Strain: HMS174
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 61-503
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LDM, CYPLI, CYTOCHROME P450 51A1, CYTOCHROME P450-14DM, CYTOCHROME P45014DM, CYTOCHROME P450LI, LANOSTEROL 14-ALPHA DEMETHYLASE, STEROL 14ALPHA DEMETHYLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
2VFV8Ligand/IonN-[(1R)-1-(3,4'-DIFLUOROBIPHENYL-4-YL)-2-(1H-IMIDAZOL-1-YL)ETHYL]-4-(5-PHENYL-1,3,4-OXADIAZOL-2-YL)BENZAMIDE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:145 , PHE A:152 , LYS A:156 , ALA A:311 , THR A:315 , PRO A:376 , ILE A:377 , MET A:380 , ARG A:382 , PRO A:441 , PHE A:442 , GLY A:443 , HIS A:447 , CYS A:449 , ILE A:450 , GLY A:451 , ALA A:455 , VFV A:580 , HOH A:2203BINDING SITE FOR RESIDUE HEM A 540
02AC2SOFTWARETYR A:131 , LEU A:134 , THR A:135 , PHE A:139 , PHE A:152 , LEU A:159 , PHE A:234 , TRP A:239 , MET A:304 , GLY A:307 , LEU A:308 , LEU A:310 , ALA A:311 , ILE A:377 , MET A:487 , HEM A:540 , VFV A:600BINDING SITE FOR RESIDUE VFV A 580
03AC3SOFTWAREPHE A:77 , MET A:100 , VAL A:101 , PHE A:105 , TYR A:107 , HIS A:236 , TRP A:239 , ILE A:379 , MET A:381 , VFV A:580 , HOH A:2117 , HOH A:2222 , LEU B:245 , PRO B:246 , LEU B:247BINDING SITE FOR RESIDUE VFV A 600
04AC4SOFTWARETYR B:145 , PHE B:152 , LYS B:156 , ALA B:311 , THR B:315 , PRO B:376 , ILE B:377 , MET B:380 , ARG B:382 , PRO B:441 , PHE B:442 , GLY B:443 , HIS B:447 , CYS B:449 , GLY B:451 , VFV B:580 , HOH B:2047BINDING SITE FOR RESIDUE HEM B 540
05AC5SOFTWARETYR B:131 , LEU B:134 , PHE B:139 , ALA B:144 , LEU B:159 , PHE B:234 , SER B:235 , HIS B:236 , TRP B:239 , MET B:304 , GLY B:307 , LEU B:308 , ALA B:311 , THR B:315 , ILE B:377 , HEM B:540 , VFV B:600 , HOH B:2040BINDING SITE FOR RESIDUE VFV B 580
06AC6SOFTWARELEU A:245 , PRO A:246 , LEU A:247 , PHE B:77 , MET B:100 , VAL B:101 , PHE B:105 , TYR B:107 , HIS B:236 , TRP B:239 , ILE B:379 , MET B:381 , VFV B:580 , HOH B:2092 , HOH B:2179 , HOH B:2180BINDING SITE FOR RESIDUE VFV B 600
07AC7SOFTWARETYR C:145 , PHE C:152 , LYS C:156 , ALA C:311 , THR C:315 , PRO C:376 , ILE C:377 , MET C:380 , ARG C:382 , PRO C:441 , PHE C:442 , GLY C:443 , HIS C:447 , CYS C:449 , ILE C:450 , GLY C:451 , ALA C:455 , VFV C:580 , HOH C:2028 , HOH C:2115BINDING SITE FOR RESIDUE HEM C 540
08AC8SOFTWARETYR C:131 , LEU C:134 , PHE C:139 , ALA C:144 , PHE C:152 , LEU C:159 , PHE C:234 , TRP C:239 , MET C:304 , GLY C:307 , LEU C:310 , ALA C:311 , THR C:315 , ILE C:377 , HEM C:540 , VFV C:600BINDING SITE FOR RESIDUE VFV C 580
09AC9SOFTWAREPHE C:77 , MET C:100 , VAL C:101 , PHE C:105 , TYR C:107 , HIS C:236 , TRP C:239 , ILE C:379 , MET C:381 , ILE C:488 , VFV C:580 , HOH C:2131 , PRO D:246 , LEU D:247BINDING SITE FOR RESIDUE VFV C 600
10BC1SOFTWARETYR D:145 , PHE D:152 , LYS D:156 , ALA D:311 , GLY D:312 , THR D:315 , PRO D:376 , ILE D:377 , MET D:380 , ARG D:382 , PRO D:441 , PHE D:442 , GLY D:443 , HIS D:447 , CYS D:449 , ILE D:450 , GLY D:451 , ALA D:455 , VFV D:580BINDING SITE FOR RESIDUE HEM D 540
11BC2SOFTWARELEU D:134 , PHE D:139 , LEU D:159 , PHE D:234 , TRP D:239 , MET D:304 , GLY D:307 , LEU D:308 , LEU D:310 , ALA D:311 , ILE D:377 , HEM D:540 , VFV D:600 , HOH D:2120BINDING SITE FOR RESIDUE VFV D 580
12BC3SOFTWARELEU C:245 , PRO C:246 , LEU C:247 , PHE D:77 , MET D:100 , VAL D:101 , PHE D:105 , TYR D:107 , HIS D:236 , TRP D:239 , LEU D:240 , ILE D:379 , MET D:381 , ILE D:488 , VFV D:580 , HOH D:2121BINDING SITE FOR RESIDUE VFV D 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UHI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UHI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UHI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UHI)

(-) Exons   (0, 0)

(no "Exon" information available for 4UHI)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh....eehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh............hhhhhhh.hhhhhh........hhhhh..hhhhhhhhhhhhhhhhhhheeee........ee......ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhi A  61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRS 502
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  


Chain B from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee........hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh....eehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh............hhhhhhh.hhhhhh........hhhhh..hhhhhhhhhhhhhhhhhhheeee........ee......ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhi B  61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRS 502
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  


Chain C from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh....eehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh............hhhhhhh.hhhhhh........hhhhh..hhhhhhhhhhhhhhhhhhheeee........ee......ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhi C  61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRS 502
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500  


Chain D from PDB  Type:PROTEIN  Length:442
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhhh....eehhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh............hhhhhhh.hhhhhh........hhhhh..hhhhhhhhhhhhhhhhhhheeee........ee......ee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uhi D  61 PPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMVGKTFTYLLGSDAAALLFNSKNEDLNAEDVYSRLTTPVFGKGVAYDVPNPVFLEQKKMLKSGLNIAHFKQHVSIIEKETKEYFESWGESGEKNVFEALSELIILTASHCLHGKEIRSQLNEKVAQLYADLDGGFSHAAWLLPGWLPLPSFRRRDRAHREIKDIFYKAIQKRRQSQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTLQKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVAGYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASGEKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIHTPENPVIRYKRRS 502
                                    70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UHI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UHI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UHI)

(-) Gene Ontology  (24, 24)

Asymmetric/Biological Unit(hide GO term definitions)

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  4uhi
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  CP51A_HUMAN | Q16850
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CP51A_HUMAN | Q16850: 3jus 3juv 3ld6 4uhl

(-) Related Entries Specified in the PDB File

4uhl HUMAN STEROL 14-ALPHA DEMETHYLASE (CYP51) IN COMPLEX WITH VFV IN P1 SPACE GROUP