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(-) Description

Title :  STRUCTURE OF A MODIFIED C93S VARIANT OF THE 3-KETOACYL-COA THIOLASE FADA5 FROM M. TUBERCULOSIS IN COMPLEX WITH COA
 
Authors :  C. M. Schaefer, C. Kisker
Date :  13 Aug 14  (Deposition) - 17 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  E (1x),G (1x)
Biol. Unit 2:  E (1x),G (1x)
Biol. Unit 3:  A,D  (1x)
Biol. Unit 4:  B,C  (1x)
Biol. Unit 5:  F,H  (1x)
Keywords :  Acetylated, Degradative Thiolase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Schaefer, R. Lu, N. M. Nesbitt, J. Schiebel, N. S. Sampson, C. Kisker
Fada5 A Thiolase From Mycobacterium Tuberculosis: A Steroid-Binding Pocket Reveals The Potential For Drug Development Against Tuberculosis.
Structure V. 23 21 2015
PubMed-ID: 25482540  |  Reference-DOI: 10.1016/J.STR.2014.10.010

(-) Compounds

Molecule 1 - ACETYL-COA ACETYLTRANSFERASE FADA5
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Expression System Plasmid: PSD31
    Expression System Taxid: 246196
    Expression System Vector Type: PLASMID
    Gene: FADA5, RV3546, P425_03688, RVBD_3546
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83332
    Strain: ATCC 25618 / H37RV
    Synonym: PROBABLE ACETYL-COA ACETYLTRANSFERASE FADA5 (ACETOACETYL-COA THIOLASE)

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x):     E (1x) G (1x) 
Biological Unit 2 (1x):     E (1x) G (1x) 
Biological Unit 3 (1x): A  D    
Biological Unit 4 (1x):  BC     
Biological Unit 5 (1x):      F H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1COA8Ligand/IonCOENZYME A
2GOL4Ligand/IonGLYCEROL
3OAS8Mod. Amino AcidO-ACETYLSERINE
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2GOL2Ligand/IonGLYCEROL
3OAS1Mod. Amino AcidO-ACETYLSERINE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1COA1Ligand/IonCOENZYME A
2GOL1Ligand/IonGLYCEROL
3OAS1Mod. Amino AcidO-ACETYLSERINE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A
2GOL-1Ligand/IonGLYCEROL
3OAS2Mod. Amino AcidO-ACETYLSERINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A
2GOL-1Ligand/IonGLYCEROL
3OAS2Mod. Amino AcidO-ACETYLSERINE
Biological Unit 5 (3, 5)
No.NameCountTypeFull Name
1COA2Ligand/IonCOENZYME A
2GOL1Ligand/IonGLYCEROL
3OAS2Mod. Amino AcidO-ACETYLSERINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREOAS A:93 , LEU A:128 , GLN A:151 , PHE A:152 , ARG A:221 , THR A:223 , THR A:224 , LEU A:231 , VAL A:234 , ALA A:242 , SER A:246 , ILE A:248binding site for residue COA A 400
02AC2SOFTWAREOAS B:93 , LEU B:128 , GLN B:151 , PHE B:152 , ARG B:221 , GLU B:222 , THR B:223 , THR B:224 , LEU B:231 , VAL B:234 , ALA B:242 , SER B:246 , ILE B:248binding site for residue COA B 400
03AC3SOFTWAREOAS C:93 , LEU C:128 , GLN C:151 , PHE C:152 , ARG C:221 , GLU C:222 , LEU C:231 , VAL C:234 , ALA C:242 , SER C:246 , ILE C:248binding site for residue COA C 400
04AC4SOFTWAREOAS D:93 , GLN D:151 , PHE D:152 , ARG D:221 , THR D:223 , THR D:224 , LEU D:231 , VAL D:234 , ALA D:242 , SER D:246 , ILE D:248binding site for residue COA D 400
05AC5SOFTWAREOAS E:93 , LEU E:128 , GLN E:151 , PHE E:152 , ARG E:221 , GLU E:222 , THR E:223 , THR E:224 , LEU E:231 , VAL E:234 , ALA E:242 , SER E:246binding site for residue COA E 401
06AC6SOFTWARETRP A:184 , ALA A:185 , ASP A:190 , ARG A:216 , GLN E:181 , TRP E:184 , ALA E:185 , ARG E:216binding site for residue GOL E 402
07AC7SOFTWAREOAS F:93 , GLN F:151 , PHE F:152 , ARG F:221 , GLU F:222 , THR F:224 , GLY F:227 , LEU F:231 , ALA F:242 , SER F:246binding site for residue COA F 400
08AC8SOFTWAREOAS G:93 , LEU G:128 , GLN G:151 , PHE G:152 , ARG G:221 , THR G:223 , THR G:224 , GLY G:227 , LEU G:231 , VAL G:234 , ALA G:242 , SER G:246 , ILE G:248binding site for residue COA G 401
09AC9SOFTWARETRP G:20 , GLN G:218binding site for residue GOL G 402
10AD1SOFTWAREGLU G:156 , LYS G:160 , GLU G:236 , GLY G:237 , GLY G:238binding site for residue GOL G 403
11AD2SOFTWAREOAS H:93 , LEU H:128 , GLN H:151 , PHE H:152 , ARG H:221 , GLU H:222 , THR H:223 , THR H:224 , LEU H:231 , VAL H:234 , ALA H:242 , SER H:246 , ILE H:248binding site for residue COA H 401
12AD3SOFTWARETYR H:3 , GLU H:260 , ARG H:273 , GLU H:389 , ARG H:390 , ILE H:391binding site for residue GOL H 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4UBU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UBU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UBU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UBU)

(-) Exons   (0, 0)

(no "Exon" information available for 4UBU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu A   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                       93-OAS                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu B   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                       93-OAS                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu C   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                       93-OAS                                                                                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu D   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                       93-OAS                                                                                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu E   0 SMGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                     9        19        29        39        49        59        69        79        89   |    99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389  
                                                                                                                        93-OAS                                                                                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhh.....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu F   1 MGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                    10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390 
                                                                                                                       93-OAS                                                                                                                                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeee.hhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu G  -1 GSMGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                     8        18        28        38        48        58        68        78        88    |   98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388   
                                                                                                                         93-OAS                                                                                                                                                                                                                                                                                                      


Chain H from PDB  Type:PROTEIN  Length:394
                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee...ee........hhhhhhhhhhhhhhhhhhh....hhhhh.eeeee....hhhhh.hhhhhhhhhh......eeeeeehhhhhhhhhhhhhhhhhhh....eeeeeeeee............hhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....eeeeeeee.........hhhhhhhh.........hhhhh...eeeeeeeeeeehhhhhhhh....eeeeeeeeee........hhhhhhhhhhhhhh.hhhhh.eeee...hhhhhhhhhhhhh.hhhhh....hhhhhh.hhhhhhhhhhhhhhhhhhhh...eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ubu H  -2 HGSMGYPVIVEATRSPIGKRNGWLSGLHATELLGAVQKAVVDKAGIQSGLHAGDVEQVIGGCVTQFGEQSNNISRVAWLTAGLPEHVGATTVDCQcGSGQQANHLIAGLIAAGAIDVGIACGIEAMSRVGLGANAGPDRSLIRAQSWDIDLPNQFEAAERIAKRRGITREDVDVFGLESQRRAQRAWAEGRFDREISPIQAPVLDEQNQPTGERRLVFRDQGLRETTMAGLGELKPVLEGGIHTAGTSSQISDGAAAVLWMDEAVARAHGLTPRARIVAQALVGAEPYYHLDGPVQSTAKVLEKAGMKIGDIDIVEINEAFASVVLSWARVHEPDMDRVNVNGGAIALGHPVGCTGSRLITTALHELERTDQSLALITMCAGGALSTGTIIERI 391
                                     7        17        27        37        47        57        67        77        87     |  97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387    
                                                                                                                          93-OAS
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UBU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UBU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UBU)

(-) Gene Ontology  (4, 4)

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 Related Entries

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        FADA5_MYCTU | I6XHI4: 4ubt 4ubv 4ubw

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