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(-) Description

Title :  COMPLEX OF THE X-DOMAIN AND OXYB FROM TEICOPLANIN BIOSYNTHESIS
 
Authors :  M. Peschke, K. Haslinger, M. J. Cryle
Date :  02 Jul 14  (Deposition) - 04 Feb 15  (Release) - 13 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Non-Ribosomal Peptide Synthetase, Condensation-Type Domain, Teicoplanin Biosynthesis, Oxygenase Complex, Oxidoreductase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Haslinger, M. Peschke, C. Brieke, E. Maximowitsch, M. J. Cryle
X-Domain Of Peptide Synthetases Recruits Oxygenases Crucial For Glycopeptide Biosynthesis.
Nature V. 521 105 2015
PubMed-ID: 25686610  |  Reference-DOI: 10.1038/NATURE14141

(-) Compounds

Molecule 1 - OXYB PROTEIN
    Chains: A
    EC Number: 1.14.14.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET24D
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-398
    Gene: TCP20
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867
 
Molecule 2 - PEPTIDE SYNTHETASE, MODULE 7
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET151D
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1047-1511
    Gene: TEID
    Organism Scientific: ACTINOPLANES TEICHOMYCETICUS
    Organism Taxid: 1867

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3SO44Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:88 , MET A:89 , HIS A:96 , ARG A:100 , LEU A:152 , ALA A:236 , GLY A:237 , ASN A:240 , VAL A:241 , PRO A:283 , PRO A:286 , THR A:287 , ARG A:289 , ALA A:339 , PHE A:340 , GLY A:341 , ILE A:344 , HIS A:345 , CYS A:347 , GLY A:349 , THR A:353 , EDO A:403 , HOH A:560binding site for residue HEM A 401
2AC2SOFTWAREARG A:52 , HIS A:342 , GLN A:378 , GLU A:379 , HOH A:503 , HOH A:510binding site for residue SO4 A 402
3AC3SOFTWAREASN A:240 , ALA A:285 , HEM A:401binding site for residue EDO A 403
4AC4SOFTWARELEU B:27 , ALA B:28 , ARG B:29 , GLY B:36 , ARG B:37 , HIS B:140 , ARG B:231 , HOH B:650 , HOH B:677binding site for residue SO4 B 501
5AC5SOFTWAREASP B:426 , HIS B:427 , HOH B:713 , HOH B:714binding site for residue SO4 B 502
6AC6SOFTWAREPRO B:12 , GLU B:13 , ARG B:14 , ARG B:48 , HOH B:612binding site for residue SO4 B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TX3)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:93 -Pro A:94
2Pro A:135 -Pro A:136

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TX3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TX3)

(-) Exons   (0, 0)

(no "Exon" information available for 4TX3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:373
                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhh.ee..ee.........eeee..eeee.hhhhhhhhhhh...ee......hhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......eee...eee..eee....eeeehhhhhh................................hhhhhhhhhhhhhhhhhhhh...ee.......eee......eeee.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tx3 A   6 SPPIHTRRQGFDPADELRAAGTLTKISTTWLAAGHAVVRQVLGDHKRFSTRRVFRPRELVGNLMDYDPPEHTRLRHLLTPGFTQRRMRRLAPRIEEIVTDRLDAMEQAGPPADLIELFADEVPGAVLCELIGVPRDDQAMFLQLCHRHLDASLSARKRAAAGEAFARYLVAMMARERKDPGDGFIGSIVAEHGDTITDEELRGVCVQLMLAGDDNVSGMIGLGVLALLRHPEQIAALRGDDQSADRAVDELIRYLTVPYAPTPRTAVEDVMVADQVIKEGETVLCSLPMANRDRALLPDADRLDVTRTPVPHVAFGHGIHHCLGAALTRLQLRIAYTALWRRFPALQLADPAQEIMFRTSTPAYGLTSLLVAW 398
                                    15        25      ||43        53        63 ||     85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395   
                                                     32|                      65|                                                                                                                                                                                                                                                                                                                                
                                                      41                       78                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:457
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhh..........eeeeeeeeee..hhhhhhhhhhhhhhhhhhh.ee..........ee..........ee....hhhhhhhhhhhh.........eeeeeeeee..eeeeeeeee....hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......................eeeeeeeehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...eeeeeeee.....hhhhh.......eeeeeeee.....hhhhhhhhhhhhhhhhh.....hhhhhhhhh.............eeeeeee.......eeeeee..........eeeeeeeee.....eeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh...hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tx3 B  -1 GAMGRPALEAVTRPERVPLTARQLRAWLLARPSEETRGRHLSVALRLRGRLDVAALEAALRDVAARHEILRTTFPGDAQTVHQHIHDAAPVRLTPVPATEEDLPARLAERGEQLFDLTRDMPWRCELFALSEKEHVLSVTVHRIAADDDSMDVFFRDLAAAYGARRAGRAPERAPLALQFADYAIWEQRLLDGEREQDSLINDQITFWRNHLAGIDQETVLPFDRARPAIPSRRAGTVALRLDAGPHARLAEAVESAGADMPQLVQAALAMLLTRYGAGTDLVIGTTLPRDEDLIDLEPMIGPFARPFPVRTDLSADPTFLEVVARVQEAVREARQHLDVPFEKIPELLALPGSLSRHPVYQVGLQVREEDAELPALRTSVEPTGVEAIELDLAFALTERRNDDDDEDGIEGALHYAADLFDHDTAASLARRLVRVLEQVAEDPGRRISDLDILLDD 461
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368||     384       394       404       414       424       434       444       454       
                                                                                                                                                                                                                                                                                                                                                                                                            369|                                                                                     
                                                                                                                                                                                                                                                                                                                                                                                                             376
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TX3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TX3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TX3)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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