4TVH - JenaLib

Title :   HIV PROTEASE (PR) DIMER IN CLOSED FORM WITH TL-3 IN ACTIVE SITE AND FRAGMENT AK-2097 IN THE OUTSIDE/TOP OF FLAP

Authors :   T. Tiefenbrunn, A. Kislukhin, M. G. Finn, C. D. Stout

Date :   26 Jun 14 (Deposition) - 17 Sep 14 (Release) - 04 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A,B

Keywords :   Hiv Protease, Allostery, Fragment Binding, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Deng, S. Forli, P. He, A. Perryman, L. Wickstrom, R. S. Vijayan, T. Tiefenbrunn, D. Stout, E. Gallicchio, A. J. Olson, R. M. Levy
Distinguishing Binders From False Positives By Free Energy Calculations: Fragment Screening Against The Flap Site Of Hiv Protease.
J. Phys. Chem. B V. 119 976 2015
PubMed-ID: 25189630 | Reference-DOI: 10.1021/JP506376Z

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (3, 3)

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:6 , LYS A:7 , HOH A:301 , THR B:12 , CYS B:67	binding site for residue BME B 101
2	AC2	SOFTWARE	TRP A:6 , PRO B:44 , LYS B:45 , MET B:46 , LYS B:55 , VAL B:56 , ARG B:57 , HIS B:69 , THR B:91 , GLN B:92 , GLY B:94 , HOH B:205	binding site for residue K97 B 102
3	AC3	SOFTWARE	ASP A:25 , GLY A:27 , ALA A:28 , ASP A:29 , MET A:46 , ILE A:47 , GLY A:48 , GLY A:49 , ILE A:50 , PRO A:81 , HOH A:318 , ASP B:25 , GLY B:27 , ALA B:28 , ASP B:29 , ASP B:30 , GLY B:48 , GLY B:49 , ILE B:50 , PHE B:53 , PRO B:81 , VAL B:82 , ILE B:84	binding site for N-[(benzyloxy)carbonyl]-L -alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide chain A

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee......eee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  4tvh A  1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeeee..eeeeeee.......ee.........eeeeeee..eeeeeeeeeeeeeee..eeeeeeeee......eehhhhhh....eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                  4tvh B  1 PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF 99
                                    10        20        30        40        50        60        70        80        90

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (4, 4)

Visualization

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	Sites
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4tvh)

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	4tvh
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Description