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(-) Description

Title :  CRYSTAL STRUCTURE OF FRAGMENT 1600-1733 OF HSV1 UL36 IN THE PRESENCE OF 1M POTASSIUM IODIDE
 
Authors :  N. Scrima, S. Bressanelli, S. Roche
Date :  19 Jun 14  (Deposition) - 18 Feb 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Fibrous Protein Tegument Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Scrima, J. Lepault, Y. Boulard, D. Pasdeloup, S. Bressanelli, S. Roche
Insights Into Herpesvirus Tegument Organization From Structural Analyses Of The 970 Central Residues Of Hsv-1 Ul36 Protein.
J. Biol. Chem. V. 290 8820 2015
PubMed-ID: 25678705  |  Reference-DOI: 10.1074/JBC.M114.612838

(-) Compounds

Molecule 1 - DENEDDYLASE
    Chains: A, B
    EC Number: 3.4.19.12, 3.4.22.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 1625-1757
    Organism Common: HHV-1
    Organism Scientific: HUMAN HERPESVIRUS 1(TYPE 1 / STRAIN 17)
    Organism Taxid: 10299
    Synonym: TEGUMENT PROTEIN VP1-2,TEGUMENT PROTEIN VP1/2, HSV1 UL36

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 40)

Asymmetric/Biological Unit (1, 40)
No.NameCountTypeFull Name
1IOD40Ligand/IonIODIDE ION

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:1710binding site for residue IOD A 1801
02AC2SOFTWARELEU A:1628binding site for residue IOD A 1802
03AC3SOFTWAREARG A:1604 , THR A:1608 , GLU A:1623binding site for residue IOD A 1803
04AC4SOFTWARETHR A:1696binding site for residue IOD A 1804
05AC5SOFTWAREALA A:1659binding site for residue IOD A 1805
06AC6SOFTWARELYS A:1641binding site for residue IOD A 1806
07AC7SOFTWAREARG A:1604 , ARG A:1624 , GLN A:1627binding site for residue IOD A 1807
08AC8SOFTWAREGLN A:1713 , GLU B:1667binding site for residue IOD A 1808
09AC9SOFTWAREARG A:1625binding site for residue IOD A 1809
10AD1SOFTWAREARG A:1712binding site for residue IOD A 1811
11AD2SOFTWAREGLY A:1598 , GLU A:1606binding site for residue IOD A 1812
12AD3SOFTWAREPRO A:1707binding site for residue IOD A 1813
13AD4SOFTWARELEU B:1710binding site for residue IOD B 1801
14AD5SOFTWARETHR B:1652 , GLN B:1665binding site for residue IOD B 1802
15AD6SOFTWARELYS B:1601 , THR B:1608binding site for residue IOD B 1803
16AD7SOFTWAREARG B:1622binding site for residue IOD B 1804
17AD8SOFTWAREARG B:1622binding site for residue IOD B 1805
18AD9SOFTWAREGLN B:1602binding site for residue IOD B 1809
19AE1SOFTWAREGLN B:1627 , IOD B:1817binding site for residue IOD B 1810
20AE2SOFTWAREIOD B:1822binding site for residue IOD B 1814
21AE3SOFTWAREARG B:1616 , IOD B:1810binding site for residue IOD B 1817
22AE4SOFTWAREGLY B:1598 , SER B:1599binding site for residue IOD B 1818
23AE5SOFTWAREGLY B:1595binding site for residue IOD B 1819
24AE6SOFTWAREIOD B:1814binding site for residue IOD B 1822
25AE7SOFTWAREPRO B:1646 , ALA B:1647 , THR B:1648binding site for residue IOD B 1824
26AE8SOFTWAREGLU A:1678 , ARG B:1725binding site for residue IOD B 1825

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TT0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TT0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TT0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TT0)

(-) Exons   (0, 0)

(no "Exon" information available for 4TT0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                  
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                4tt0 A 1597 LGSAKQQRAEATERVTAGLREVLAARERRAQLEAEGLANLKTLLKVVAVPATVAKTLDQARSAEEIADQVEILVDQTEKARELDVQAVAWLEHAQRTFETHPLSAASGDGPGLLTRQGARLQALFDTRR 1725
                                  1606      1616      1626      1636      1646      1656      1666      1676      1686      1696      1706      1716         


Chain B from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                4tt0 B 1595 GPLGSAKQQRAEATERVTAGLREVLAARERRAQLEAEGLANLKTLLKVVAVPATVAKTLDQARSAEEIADQVEILVDQTEKARELDVQAVAWLEHAQRTFETHPLSAASGDGPGLLTRQGARLQALFDTRR 1725
                                  1604      1614      1624      1634      1644      1654      1664      1674      1684      1694      1704      1714      1724
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TT0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TT0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TT0)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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