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(-) Description

Title :  CRYSTAL STRUCTURE OF A DELETION MUTANT OF A TYROSYL-T/RNA SYNTHETASE COMPLEXED WITH TYROSINE
 
Authors :  P. Brick, D. M. Blow
Date :  29 Jun 89  (Deposition) - 15 Oct 89  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ligase (Synthetase) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Brick, D. M. Blow
Crystal Structure Of A Deletion Mutant Of A Tyrosyl-Trna Synthetase Complexed With Tyrosine.
J. Mol. Biol. V. 194 287 1987
PubMed-ID: 3612807  |  Reference-DOI: 10.1016/0022-2836(87)90376-7
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TYROSYL-TRNA SYNTHETASE
    Chains: A, B
    EC Number: 6.1.1.1
    Engineered: YES
    Expression System Plasmid: M13
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1TYR2Mod. Amino AcidTYROSINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:34 , GLY A:36 , ASP A:38 , LEU A:68 , ASP A:78 , TYR A:169 , GLN A:173 , ASP A:176 , GLN A:189 , GLN A:195 , HOH A:348 , HOH A:375BINDING SITE FOR RESIDUE TYR A 320
2AC2SOFTWARETYR B:34 , GLY B:36 , ASP B:38 , ASP B:78 , TYR B:169 , GLN B:173 , ASP B:176 , GLN B:189 , GLN B:195 , HOH B:351 , HOH B:389BINDING SITE FOR RESIDUE TYR B 320

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TS1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TS1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TS1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TS1)

(-) Exons   (0, 0)

(no "Exon" information available for 4TS1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4ts1a_ A: Tyrosyl-tRNA synthetase (TyrRS)                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 4ts1A01 A:1-222 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                       4ts1A02 A:223-318 Tyrosyl-Transfer RNA Synthetase                                               -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh....ee..hhhhhhhhhh...eeeeee...........hhhhhhhhhhhh...eeeeee...hhh...............hhhhhhhhhhhhhhh.............eeee.hhhh....hhhhhhh.hhh..hhhhh..hhhh........hhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh...eeeee...........................hhhhhhhhh......hhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ts1 A   1 MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGRAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRQAIRYAY 320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210||     222       232       242       252       262       272       282       292       302       312      ||
                                                                                                                                                                                                                                            211|                                                                                                      319|
                                                                                                                                                                                                                                             214                                                                                                       320


Chain B from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains d4ts1b_ B: Tyrosyl-tRNA synthetase (TyrRS)                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 4ts1B01 B:1-222 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                                                                                       4ts1B02 B:223-312 Tyrosyl-Transfer RNA Synthetase                                         -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh....ee..hhhhhhhhhh...eeeeee...........hhhhhhhhhhhh...eeeeee...hhh...............hhhhhhhhhhhhhhh.............eeee.hhhh....hhhhhhh.hhh..hhhhh..hhhh........hhhhhhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhh...eeeee...........................hhhhhhhhh......hhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ts1 B   1 MDLLAELQWRGLVNQTTDEDGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGRAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTSPYEFYQFWINTDDRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTKLVHGEEALRY 320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210||     222       232       242       252       262       272       282       292       302       312||
                                                                                                                                                                                                                                            211|                                                                                                313|
                                                                                                                                                                                                                                             214                                                                                                 320
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TS1)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYY_GEOSE | P00952: 1jh3 1tya 1tyb 1tyc 1tyd 2ts1 3ts1

(-) Related Entries Specified in the PDB File

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