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(-) Description

Title :  CRYSTAL STRUCTURE OF DNA POLYMERASE SLIDING CLAMP FROM MYCOBATERIUM TUBERCULOSIS
 
Authors :  V. Olieric, D. Burnouf, E. Ennifar, P. Wolff
Date :  14 Jun 14  (Deposition) - 10 Sep 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.29
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Sliding Clamp, Processivity, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Wolff, I. Amal, V. Olieric, O. Chaloin, G. Gygli, E. Ennifar, B. Lorber, G. Guichard, J. Wagner, A. Dejaegere, D. Y. Burnouf
Differential Modes Of Peptide Binding Onto Replicative Sliding Clamps From Various Bacterial Origins.
J. Med. Chem. V. 57 7565 2014
PubMed-ID: 25170813  |  Reference-DOI: 10.1021/JM500467A

(-) Compounds

Molecule 1 - DNA POLYMERASE III SUBUNIT BETA
    Chains: A, B
    EC Number: 2.7.7.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DNAN, MT0002
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 83331
    Strain: CDC 1551 / OSHKOSH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4TR7)

(-) Sites  (0, 0)

(no "Site" information available for 4TR7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TR7)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro A:199 -Asp A:200
2Gly A:221 -Gly A:222
3Asp A:238 -Gly A:239
4Gly A:378 -Leu A:379
5Ser B:197 -Ser B:198
6Gly B:221 -Gly B:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TR7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TR7)

(-) Exons   (0, 0)

(no "Exon" information available for 4TR7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:375
                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeehhhhhhhhhhhhh.hhh.eeeeee...eeeeee...eeeeeeee.eeee.eeeeeehhhhhhhhhhh...eeeeeee..eeeeee..eeeeee..hhhhh........eeeeehhhhhhhhhhhhhh......hhhh.eeeeeee..eeeeeee...eeeeeeee.ee....eeeeeeehhhhhhhhhh.....eeee.......eeeeee..eeeeee........hhhhh..ee.eeeeeehhhhhhhhhhhhhhhhhhh.eeeeee..eeeeeeee...eeeeeeee.eee...eeeeehhhhhhhhhhh....eeeeee......eeeeee..............ee.....eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tr7 A  10 GLTDLTFRLLRESFADAVSWVAKNPVLSGVLLTGSDNGLTISGFDYEVSEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASPDIEAAVLVPAKTLAEAAKAGGGSDVRLSLGVGKDGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVSGDRPVAGLNGNGPFPAVSTDYVYLLMPVR 400
                                    19        29   ||   46        56        66   ||   77        87        97       107       117       127       137       147       157 ||    168       178       188       199       209       219|      234       244       254       264       274       284       294       304       314       324       334       344       354       364      |375       385       395     
                                                  33|                           70|                                                                                    159|                                 197|                 219|     229|                                                                                                                                      371|                           
                                                   41                            72                                                                                     161                                  199                  221      234                                                                                                                                       373                           


Chain B from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeehhhhhhhhhhhhh.......hhhh.eeeeee...eeeee...eeeeeee..eeee.eeeeeehhhhhhhhhhh...eeeeeee..eeeeee..eeeeee..hhhhh........eeeeehhhhhhhhhhhhhh.......hhhh.eeeeeee..eeeeeee...eeeeeeee.ee.....eeeeeeehhhhhhhhhhh.....eeee...eeeeee..eeeeee.......hhhhhh..ee.eeeeeehhhhhhhhhhhhhhhhhhh.eeeeee..eeeeeeee...eeeeeeee.eee...eeeeehhhhhhhhhhhhh..eeeeee......eeeeee....ee.....eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4tr7 B  10 GLTDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSNGLTISGFDYEVSEAQVGAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVEGNRVALTCGNARFSLPTMPVEDYPTLPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAATDRFRLAVRELKWSASSPDIEAAVLVPAKTLAEAAKAGIGGSDVRLSLGGLLGISGNGKRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVADRGAQVRMEFADGSVRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRSERVSFGFTTAGKPALLRPVGNGPFPAVSTDYVYLLMPVR 400
                                    19        29        39        49 ||     60        70|       81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       239       249       259       269       279       289       299       309       319       329       339       349       359       369|      390       400
                                                                    51|               70|                                                                                                                                                           230|                                                                                                                               369|                   
                                                                     53                72                                                                                                                                                            239                                                                                                                                381
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TR7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TR7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TR7)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 4tr7)
 
  Cis Peptide Bonds
    Asp A:238 - Gly A:239   [ RasMol ]  
    Gly A:221 - Gly A:222   [ RasMol ]  
    Gly A:378 - Leu A:379   [ RasMol ]  
    Gly B:221 - Gly B:222   [ RasMol ]  
    Pro A:199 - Asp A:200   [ RasMol ]  
    Ser B:197 - Ser B:198   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPO3B_MYCTO | P9WNU0: 3p16 3rb9

(-) Related Entries Specified in the PDB File

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