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(-) Description

Title :  CRYSTAL STRUCTURE OF GSH-BOUND CGRX2/C15S
 
Authors :  E. H. Lee, K. Y. Hwang
Date :  13 Jun 14  (Deposition) - 01 Oct 14  (Release) - 07 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.58
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Glutaredoxin, Gsh, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. H. Lee, H. Y. Kim, K. Y. Hwang
The Gsh- And Gssg-Bound Structures Of Glutaredoxin From Clostridium Oremlandii.
Arch. Biochem. Biophys. V. 564C 20 2014
PubMed-ID: 25218089  |  Reference-DOI: 10.1016/J.ABB.2014.09.001

(-) Compounds

Molecule 1 - GLUTAREDOXIN 3
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3) STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CLOS_2422
    Mutation: YES
    Organism Scientific: ALKALIPHILUS OREMLANDII
    Organism Taxid: 350688
    Strain: OHILAS
 
Molecule 2 - GLUTAREDOXIN 3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: BL21(DE3) STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CLOS_2422
    Mutation: YES
    Organism Scientific: ALKALIPHILUS OREMLANDII
    Organism Taxid: 350688
    Strain: OHILAS

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
2CSU1Mod. Amino AcidCYSTEINE-S-SULFONIC ACID
3GSH2Ligand/IonGLUTATHIONE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
2CSU-1Mod. Amino AcidCYSTEINE-S-SULFONIC ACID
3GSH1Ligand/IonGLUTATHIONE
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CSO-1Mod. Amino AcidS-HYDROXYCYSTEINE
2CSU1Mod. Amino AcidCYSTEINE-S-SULFONIC ACID
3GSH1Ligand/IonGLUTATHIONE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:9 , TYR A:11 , CYS A:12 , TYR A:14 , THR A:52 , VAL A:53 , PRO A:54 , GLY A:65 , CSO A:66 , ASP A:67 , HOH A:219 , HOH A:221 , HOH A:228 , HOH A:251 , HOH A:292binding site for residue GSH A 101
2AC2SOFTWARELYS B:9 , TYR B:11 , CYS B:12 , THR B:52 , VAL B:53 , PRO B:54 , GLU B:61 , GLY B:65 , CSU B:66 , ASP B:67 , LYS B:81 , HOH B:209 , HOH B:234 , HOH B:250 , HOH B:286binding site for residue GSH B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TR1)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Val A:53 -Pro A:54
2Val B:53 -Pro B:54

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TR1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TR1)

(-) Exons   (0, 0)

(no "Exon" information available for 4TR1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhh.....eeee..eeeehhhhhhhhhhh.hhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4tr1 A  1 MKNITIYTKNYCPYSKKAVSLLSSKGVDFKEVDVTHDSKAFEDVMAKTGWDTVPQVFVDEEFLGGcDDIHALDRQGILDKKLGLKLEHHHHH 92
                                    10        20        30        40        50        60     |  70        80        90  
                                                                                            66-CSO                      


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                           
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhh.....eeee..eeeehhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                  4tr1 B  1 MKNITIYTKNYCPYSKKAVSLLSSKGVDFKEVDVTHDSKAFEDVMAKTGWDTVPQVFVDEEFLGGcDDIHALDRQGILDKKLGLKLEHHHHH 92
                                    10        20        30        40        50        60     |  70        80        90  
                                                                                            66-CSU
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TR1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TR1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TR1)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A8MJH2_ALKOO | A8MJH2: 4tr0

(-) Related Entries Specified in the PDB File

4tr0