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(-) Description

Title :  CRYSTAL STRUCTURE OF CLOSTRIDIUM HISTOLYTICUM COLG COLLAGENASE POLYCYSTIC KIDNEY DISEASE-LIKE DOMAIN AT 1.4 ANGSTROM RESOLUTION
 
Authors :  R. Bauer, J. Sakon, S. T. L. Philominathan, O. Matsushita, S. Gann
Date :  03 Jun 14  (Deposition) - 11 Mar 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bauer, K. Janowska, K. Taylor, B. Jordan, S. Gann, T. Janowski, E. C. Latimer, O. Matsushita, J. Sakon
Structures Of Three Polycystic Kidney Disease-Like Domains From Clostridium Histolyticum Collagenases Colg And Colh.
Acta Crystallogr. , Sect. D V. 71 565 2015
PubMed-ID: 25760606  |  Reference-DOI: 10.1107/S1399004714027722

(-) Compounds

Molecule 1 - COLLAGENASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 797-881
    Gene: COLG
    Organism Scientific: CLOSTRIDIUM HISTOLYTICUM
    Organism Taxid: 1498

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4TN9)

(-) Sites  (0, 0)

(no "Site" information available for 4TN9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4TN9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4TN9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4TN9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4TN9)

(-) Exons   (0, 0)

(no "Exon" information available for 4TN9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.eee....eeee..........eeeeeee.....eee..eeee.....eeeeeeeeeee....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4tn9 A 685 GSAPIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGATSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKN 770
                                   694       704       714       724       734       744       754       764      


Chain B from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.eee....eeee..........eeeeeee.....eee..eeee.....eeeeeeeeeee....eeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4tn9 B 685 GSAPIAKVTGPSTGAVGRNIEFSGKDSKDEDGKIVSYDWDFGDGATSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKNE 771
                                   694       704       714       724       734       744       754       764
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4TN9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4TN9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4TN9)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9X721_HATHI | Q9X721: 2o8o
UniProtKB/TrEMBL
        Q9X721_HATHI | Q9X721: 2y3u 2y50 2y6i 2y72 4aqo 4are 4hpk 4jrw 5iku

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4TN9)